🤖 pre-commit autoupdate #676
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python application | |
| on: | |
| push: | |
| branches: [ dev, main, release ] | |
| tags: v* | |
| pull_request: | |
| branches: [ dev, main, release ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 15 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.10" | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install -y libopenslide-dev libopenjp2-7 | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| - name: Echo OpenSlide Version | |
| run: dpkg -s libopenslide-dev | grep Version | |
| - name: Echo OpenJPEG Version | |
| run: opj_compress -h | head | |
| - name: List PIP Package Versions | |
| run: | | |
| pip list | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: coverage | |
| path: coverage.xml | |
| - name: Report test coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| files: coverage.xml | |
| fail_ci_if_error: false | |
| verbose: true | |
| - name: Report test coverage to DeepSource | |
| uses: deepsourcelabs/test-coverage-action@master | |
| with: | |
| key: python | |
| coverage-file: coverage.xml | |
| dsn: ${{ secrets.DEEPSOURCE_DSN }} | |
| fail-ci-on-error: false | |
| release: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 15 | |
| needs: build | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install -y libopenslide-dev libopenjp2-7 | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install build | |
| - name: Build package | |
| run: python -m build | |
| - name: Publish package to Test PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| repository_url: https://test.pypi.org/legacy/ | |
| skip_existing: true | |
| - name: Publish package to PyPI | |
| if: startsWith(github.ref, 'refs/tags/v') # Only run on tags starting with v | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} |