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update to have regtests pass #12

update to have regtests pass

update to have regtests pass #12

Workflow file for this run

name: regtest_gnu
on: [push, pull_request, workflow_dispatch]
# Cancel in-progress workflows when pushing to a branch
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
env:
cache_key: gnu11-1
CC: gcc-10
FC: gfortran-10
CXX: g++-10
# Split into a steup step, and a WW3 build step which
# builds multiple switches in a matrix. The setup is run once and
# the environment is cached so each build of WW3 can share the dependencies.
jobs:
setup:
runs-on: ubuntu-latest
steps:
- name: checkout-ww3
if: steps.cache-env.outputs.cache-hit != 'true'
uses: actions/checkout@v3
with:
path: ww3
# Cache spack, OASIS, and compiler
# No way to flush Action cache, so key may have # appended
- name: cache-env
id: cache-env
uses: actions/cache@v3
with:
path: |
spack
~/.spack
work_oasis3-mct
key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }}
# Build WW3 spack environment
- name: install-dependencies-with-spack
if: steps.cache-env.outputs.cache-hit != 'true'
run: |
# Install NetCDF, ESMF, g2, etc using Spack
sudo apt install cmake
git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git
source spack/share/spack/setup-env.sh
spack env create ww3-gnu ww3/model/ci/spack_gnu.yaml
spack env activate ww3-gnu
spack compiler find
spack external find cmake
spack add [email protected]
spack concretize
spack install --dirty -v
- name: build-oasis
if: steps.cache-env.outputs.cache-hit != 'true'
run: |
source spack/share/spack/setup-env.sh
spack env activate ww3-gnu
export WWATCH3_DIR=${GITHUB_WORKSPACE}/ww3/model
export OASIS_INPUT_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/oasis3-mct
export OASIS_WORK_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct
cd ww3/regtests/ww3_tp2.14/input/oasis3-mct/util/make_dir
cmake .
make VERBOSE=1
cp -r ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct ${GITHUB_WORKSPACE}
regtest_gnu:
needs: setup
runs-on: ubuntu-latest
steps:
- name: install-dependencies
run: |
sudo apt-get update
sudo apt-get install doxygen gcovr valgrind
- name: checkout-ww3
uses: actions/checkout@v3
with:
path: ww3
- name: cache-env
id: cache-env
uses: actions/cache@v3
with:
path: |
spack
~/.spack
work_oasis3-mct
key: spack2-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }}

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You have an error in your yaml syntax on line 95
- name: build-ww3
run: |
source spack/share/spack/setup-env.sh
spack env activate ww3-gnu
set -x
cd ww3
export CC=mpicc
export FC=mpif90
export OASISDIR=${GITHUB_WORKSPACE}/work_oasis3-mct
# mkdir build && cd build
export LD_LIBRARY_PATH="/home/runner/work/WW3/WW3/spack/var/spack/environments/ww3-gnu/.spack-env/view/:$LD_LIBRARY_PATH"
# cmake -DSWITCH=${GITHUB_WORKSPACE}/ww3/regtests/unittests/data/switch.io -DCMAKE_BUILD_TYPE=Debug ..
# make -j2 VERBOSE=1
cd ${GITHUB_WORKSPACE}/ww3
ls -l
${GITHUB_WORKSPACE}/ww3/model/bin/ww3_from_ftp.sh -k
cd regtests
./bin/run_cmake_test -o all -S -T -s PR1_MPI -w work_PR1_MPI -f -p mpirun -n 24 ../model ww3_tp2.5
cd ww3_tp2.5
ls -l
cd work_PR1_MPI
pwd
ls -l
ncdump -h out_pnt.ww3.nc > ncdump_out.txt
cat ncdump_out.txt
pwd
cat ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.5/out_pnt_ncdump.txt
cmp ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.5/out_pnt_ncdump.txt ncdump_out.txt
- name: cache-data
id: cache-data
uses: actions/cache@v3
with:
path: ww3/ww3_from_ftp.v7.14.1.tar.gz
key: ww3_from_ftp.v7.14.1