fix ci #6

	name: Python CI

	on:
	push:
	branches: [ main ]

	# When this workflow is queued, automatically cancel any previous running
	# or pending jobs from the same branch
	concurrency:
	group: conda-${{ github.ref }}
	cancel-in-progress: true

	# Required shell entrypoint to have properly activated conda environments
	defaults:
	run:
	shell: bash -l {0}

	jobs:
	build:

	strategy:
	matrix:
	os: ["ubuntu-latest"]
	python-version: ["3.10"]

	runs-on: "${{ matrix.os }}"

	steps:

	- uses: actions/checkout@v4

	- name: "Cache conda"
	uses: "actions/cache@v1"
	env:
	# Increase this value to reset cache if env.yml has not changed
	CACHE_NUMBER: 0
	with:
	path: "~/conda_pkgs_dir"
	key: "${{ matrix.os }}-conda-${{ matrix.python-version }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('enviroment.yml') }}"

	- name: Set up Python ${{ matrix.python-version }}
	uses: conda-incubator/[email protected]
	with:
	miniforge-version: latest
	use-mamba: true
	python-version: ${{ matrix.python-version }}
	channel-priority: strict
	environment-file: environment.yml
	activate-environment: "zarrcade"

	- name: Review dependencies
	run: \|
	which python
	pip list
	mamba list

	- name: Test with pytest
	run: \|
	python -m pytest -W ignore::DeprecationWarning
	#python -m pytest --cov=zarrcade --cov-report=html --cov-report=term -W ignore::DeprecationWarning --html=htmlcov/test_results.html

	- name: Upload pytest and coverage results
	uses: actions/upload-artifact@v4
	if: always()
	with:
	name: testcoverage-${{ matrix.os }}-py${{ matrix.python-version }}
	path: \|
	htmlcov/*

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