fixed coverage #4
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name: Python CI | |
on: | |
push: | |
branches: [ main ] | |
# When this workflow is queued, automatically cancel any previous running | |
# or pending jobs from the same branch | |
concurrency: | |
group: conda-${{ github.ref }} | |
cancel-in-progress: true | |
# Required shell entrypoint to have properly activated conda environments | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.10"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: conda-incubator/[email protected] | |
with: | |
miniforge-version: latest | |
use-mamba: true | |
python-version: ${{ matrix.python-version }} | |
channel-priority: strict | |
environment-file: environment.yml | |
- name: Review dependencies | |
run: | | |
which python | |
pip list | |
mamba list | |
- name: Test with pytest | |
run: | | |
python -m pytest --cov=zarrcade --cov-report=html --cov-report=term -W ignore::DeprecationWarning --html=htmlcov/test_results.html | |
- name: Upload pytest and coverage results | |
uses: actions/upload-artifact@v4 | |
if: always() | |
with: | |
name: testcoverage-${{ matrix.os }}-py${{ matrix.python-version }} | |
path: | | |
htmlcov/* |