Squeezed commit

.gitignore

@@ -0,0 +1,4 @@
+_site/
+.vscode/
+.DS_Store
+Gemfile.lock

CONTRIBUTING.md

@@ -0,0 +1,5 @@
+Contributions are welcome! Please add issues and make pull requests. There are no stupid questions. All ideas are welcome. This is a volunteer project. Be excellent to each other.
+
+Fork from master and go from there. This repository is intended to remain a generic, ready-to-fork template that demonstrates the features of academicpages.
+
+If you make a pull request and change code, please make sure there is a closed issue tagged with 'code change' that has some comment linking to either the single commit (if the change was just one commit) or a diff comparing before/after the change (see [issue 21](https://github.com/academicpages/academicpages.github.io/issues/21) for example). This is so that those who have forked this repo and modified it for their purposes can more easily patch bugs and new features.

Gemfile

@@ -0,0 +1,27 @@
+source "https://rubygems.org"
+
+# Hello! This is where you manage which Jekyll version is used to run.
+# When you want to use a different version, change it below, save the
+# file and run `bundle install`. Run Jekyll with `bundle exec`, like so:
+#
+#     bundle exec jekyll serve
+#
+# This will help ensure the proper Jekyll version is running.
+# Happy Jekylling!
+
+gem "github-pages", group: :jekyll_plugins
+
+# If you want to use Jekyll native, uncomment the line below.
+# To upgrade, run `bundle update`.
+
+# gem "jekyll"
+
+gem "wdm", "~> 0.1.0" if Gem.win_platform?
+
+# If you have any plugins, put them here!
+group :jekyll_plugins do
+  # gem "jekyll-archives"
+  gem "jekyll-feed"
+  gem 'jekyll-sitemap'
+  gem 'hawkins'
+end

LICENSE

@@ -0,0 +1,21 @@
+The MIT License (MIT)
+
+Copyright (c) 2016 Michael Rose
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.md

@@ -0,0 +1,31 @@
+A Github Pages template for academic websites. This was forked (then detached) by [Stuart Geiger](https://github.com/staeiou) from the [Minimal Mistakes Jekyll Theme](https://mmistakes.github.io/minimal-mistakes/), which is © 2016 Michael Rose and released under the MIT License. See LICENSE.md.
+
+I think I've got things running smoothly and fixed some major bugs, but feel free to file issues or make pull requests if you want to improve the generic template / theme.
+
+### Note: if you are using this repo and now get a notification about a security vulnerability, delete the Gemfile.lock file. 
+
+# Instructions
+
+1. Register a GitHub account if you don't have one and confirm your e-mail (required!)
+1. Fork [this repository](https://github.com/academicpages/academicpages.github.io) by clicking the "fork" button in the top right. 
+1. Go to the repository's settings (rightmost item in the tabs that start with "Code", should be below "Unwatch"). Rename the repository "[your GitHub username].github.io", which will also be your website's URL.
+1. Set site-wide configuration and create content & metadata (see below -- also see [this set of diffs](http://archive.is/3TPas) showing what files were changed to set up [an example site](https://getorg-testacct.github.io) for a user with the username "getorg-testacct")
+1. Upload any files (like PDFs, .zip files, etc.) to the files/ directory. They will appear at https://[your GitHub username].github.io/files/example.pdf.  
+1. Check status by going to the repository settings, in the "GitHub pages" section
+1. (Optional) Use the Jupyter notebooks or python scripts in the `markdown_generator` folder to generate markdown files for publications and talks from a TSV file.
+
+See more info at https://academicpages.github.io/
+
+## To run locally (not on GitHub Pages, to serve on your own computer)
+
+1. Clone the repository and made updates as detailed above
+1. Make sure you have ruby-dev, bundler, and nodejs installed: `sudo apt install ruby-dev ruby-bundler nodejs`
+1. Run `bundle clean` to clean up the directory (no need to run `--force`)
+1. Run `bundle install` to install ruby dependencies. If you get errors, delete Gemfile.lock and try again.
+1. Run `bundle exec jekyll liveserve` to generate the HTML and serve it from `localhost:4000` the local server will automatically rebuild and refresh the pages on change.
+
+# Changelog -- bugfixes and enhancements
+
+There is one logistical issue with a ready-to-fork template theme like academic pages that makes it a little tricky to get bug fixes and updates to the core theme. If you fork this repository, customize it, then pull again, you'll probably get merge conflicts. If you want to save your various .yml configuration files and markdown files, you can delete the repository and fork it again. Or you can manually patch. 
+
+To support this, all changes to the underlying code appear as a closed issue with the tag 'code change' -- get the list [here](https://github.com/academicpages/academicpages.github.io/issues?q=is%3Aclosed%20is%3Aissue%20label%3A%22code%20change%22%20). Each issue thread includes a comment linking to the single commit or a diff across multiple commits, so those with forked repositories can easily identify what they need to patch.

_config.dev.yml

@@ -0,0 +1,13 @@
+# Develop override settings
+
+url: http://localhost:4000
+
+analytics:
+  provider: false
+
+comments:
+  disqus:
+    shortname            : "mmistakes-dev"
+
+sass:
+  style: expanded