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James-Thorson-NOAA authored Jul 29, 2024
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# EcoState
State-space extension of EcoPath-with-EcoSim

[![Documentation](https://img.shields.io/badge/documentation-EcoState-orange.svg?colorB=E91E63)](https://james-thorson-noaa.github.io/EcoState/)

Package _EcoState_ fits a state-space mass-balance model intended for aquatic ecosystems, using mass-balance equations from matching and dynamical equations matching Ecosim. Unlike Ecopath with Ecosim (EwE), it fits both biological parameters (e.g., equilibrium biomass and predator-prey vulnerability) and measurement parameters (e.g., catchability coefficients) via fit to time-series data. It also estimates additional process errors representing nonstationarity in growth efficiency, ecotrophic efficient, migration, or other unmodeled processes.

## Installation

EcoState can be installed as a private repo. First click Code -> Download ZIP and save it locally. Then install it from that local copy:
EcoState can be installed from GitHub using:

``` r
library(devtools)
install_local([LOCAL PATH], dependencies = TRUE)
library(remotes)
install_github( "James-Thorson-NOAA/EcoState" )
```

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