Code for reproducing the key results of our paper:
Grey matter volume and CSF biomarkers predict neuropsychological subtypes of MCI

Lefort-Besnard J, Naveau M, Delcroix N, Decker L, Cignetti F (for the ADNI)

fit_atlas.py:

Extract grey matter volume per ROI using Yeo atlas.

clustering.py:

Run clustering algorithm (n=3 according to R package nbclust) using MCI neuropsychological scores

regression_analyses.py:

Compute regression analyses for each MCI subgroup versus controls using GM or CSF level

Benchmark.py:

Probing complex relationships among the grey matter rois

multinomial_analyses.py

Compute multiclass (One versus Rest) regression analyses for MCI subgroups using GM or CSF level

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Please cite this paper when using the code for your research.

You can clone this repository by:

git clone https://github.com/JLefortBesnard/MCI_cluster_prediction.git