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rename source file after download for CLEAR + enhance sanity check
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boegel committed Oct 2, 2023
1 parent f7dae60 commit 968ba7a
Showing 1 changed file with 19 additions and 16 deletions.
Original file line number Diff line number Diff line change
@@ -1,19 +1,19 @@
easyblock = "PythonPackage"
easyblock = 'PythonPackage'

name = "CLEAR"
version = "20210117"
versionsuffix = "-Python-%(pyver)s"
local_commit = "64bc22d52d99466a044848992fd0d775a983d60c"
name = 'CLEAR'
local_commit = '64bc22d52d99466a044848992fd0d775a983d60c'
version = '20210117'
versionsuffix = '-Python-%(pyver)s'

homepage = "https://github.com/YangLab/CLEAR"
description = "Direct comparison of circular and linear RNA expression"

source_urls = ["https://github.com/YangLab/CLEAR/archive"]
sources = ["%s.tar.gz" % local_commit]
checksums = ['a0824bcbaf6db52dcbb24467277045d341bbd266e582d9a89fd1656c89ba64ea']
homepage = 'https://github.com/YangLab/CLEAR'
description = 'Direct comparison of circular and linear RNA expression'

toolchain = {'name': 'foss', 'version': '2021b'}

source_urls = ['https://github.com/YangLab/CLEAR/archive']
sources = [{'download_filename': '%s.tar.gz' % local_commit, 'filename': SOURCE_TAR_GZ}]
checksums = ['a0824bcbaf6db52dcbb24467277045d341bbd266e582d9a89fd1656c89ba64ea']

dependencies = [
('Python', '2.7.18'),
('CIRCexplorer2', '2.3.8', versionsuffix),
Expand All @@ -26,13 +26,16 @@ download_dep_fail = True
use_pip = True
sanity_pip_check = True

options = {'modulename': 'src.circ_quant'}

sanity_check_paths = {
'files': ['bin/clear_quant'],
'dirs': []
'files': ['bin/circ_quant', 'bin/clear_quant'],
'dirs': ['lib/python%(pyshortver)s/site-packages'],
}

sanity_check_commands = ["clear_quant -h"]

options = {'modulename': False}
sanity_check_commands = [
"circ_quant --help",
"clear_quant --help",
]

moduleclass = 'bio'

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