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adding easyconfigs: Oases-20180312-GCC-12.3.0.eb
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Orient
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easybuild/easyconfigs/o/Oases/Oases-20180312-GCC-12.3.0.eb
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easyblock = "MakeCp" | ||
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name = 'Oases' | ||
version = '20180312' | ||
local_commit = '1b4c14c' | ||
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homepage = 'http://www.ebi.ac.uk/~zerbino/oases/' | ||
description = """Oases is a de novo transcriptome assembler designed to produce transcripts from | ||
short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly.""" | ||
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toolchain = {'name': 'GCC', 'version': '12.3.0'} | ||
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# This is taken from the Oases repo to avoid setting git_config in sources | ||
velvet_commit = '9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3' | ||
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sources = [ | ||
'%s.tar.gz' % local_commit, | ||
'%s.tar.gz' % velvet_commit, | ||
] | ||
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source_urls = [ | ||
'https://github.com/dzerbino/%(namelower)s/archive/', | ||
'https://github.com/dzerbino/velvet/archive/', | ||
] | ||
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# listed make targets exclude 'doc' on purpose | ||
buildopts = ['VELVET_DIR=../velvet-%s cleanobj velvet oases' % velvet_commit] | ||
parallel = 1 | ||
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files_to_copy = [(["oases"], 'bin'), "data", "scripts", "src", "doc", "LICENSE.txt", "README.md"] | ||
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sanity_check_paths = { | ||
'files': ["bin/oases", "LICENSE.txt", "README.md"], | ||
'dirs': ["data", "scripts", "src", "doc"] | ||
} | ||
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sanity_check_commands = ['oases --version'] | ||
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moduleclass = 'bio' |