bioinformatics stockholm

programming and visualization material for the bioinformatics course taught at Karolinska Institutet 2018-2021

Name		Name	Last commit message	Last commit date
Latest commit History 77 Commits
1_dotplots		1_dotplots
Miniblast		Miniblast
dot_plotting		dot_plotting
dynamic_programming		dynamic_programming
filtered_feature_bc_matrix		filtered_feature_bc_matrix
msa		msa
phylo		phylo
sample_DLS_dataset		sample_DLS_dataset
.gitattributes		.gitattributes
0_intro_to_programming.ipynb		0_intro_to_programming.ipynb
1_intermediate_programming.ipynb		1_intermediate_programming.ipynb
1b_biopython_and_string_practice.ipynb		1b_biopython_and_string_practice.ipynb
2_pairwise_sequence_comparison.ipynb		2_pairwise_sequence_comparison.ipynb
3_blast_msa.ipynb		3_blast_msa.ipynb
4_phylogeny.ipynb		4_phylogeny.ipynb
7_scRNAseq_analysis.ipynb		7_scRNAseq_analysis.ipynb
Programming_cheat_sheet.ipynb		Programming_cheat_sheet.ipynb
README.md		README.md
bioanalyzer_simple_data.txt		bioanalyzer_simple_data.txt
cry2.png		cry2.png
example_plot.csv		example_plot.csv
microarray.png		microarray.png
ngs_data.fsa		ngs_data.fsa
python_bioinformatics_toolbox.ipynb		python_bioinformatics_toolbox.ipynb
seqscopied.ipynb		seqscopied.ipynb
single_sequence.fsa		single_sequence.fsa

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