v1.2.0

Compatible with

• emodpy_malaria version: 2.4.3
• Eradication version: 2.20.5347.0
• branch: Malaria-Ongoing(2cda8c4dbe)

Suite in Comps: link

What's Changed

• Modular structure by @YeChen-IDM in #53
• Change for #51, #56 and #57 by @YeChen-IDM in #59

Full Changelog: v1.1.0...v1.2.0

v1.1.0

Compatible with

emodpy_malaria version: 2.4.3
Eradication version: 2.20.5299.0
branch: Malaria-Ongoing(250bb79467)
Suite in Comps: link

What's Changed

• Update 2 failed tests. fix for #38 by @YeChen-IDM in #40
• Translate R plotting scripts into Python and add get_version.py by @YeChen-IDM in #17
• Add a script to retrieve comps ids from a suite ID by @YeChen-IDM in #43
• Update requirements.txt: use scikit-learn instead of sklearn by @YeChen-IDM in #44
• Python plotting scripts updates by @YeChen-IDM in #45
• Snakemake plotting and reporting scripts integration; Update to the latest Eradication on M-O; update to version v1.1.0 by @YeChen-IDM in #47

Full Changelog: v1.0.0...v1.1.0

v1.0.0

• emodpy_malaria version: 2.3.1
• Eradication version: 2.20.5194.0
• branch: Malaria-Ongoing(57329cf3a6)

1. Update code to work with the latest Emod and emodpy-malaria.
2. Test Updates:
   2.1 Refactor run_sim.py to be more testable
   2.2 Add regression tests for comparing inputs generated by run_sim.py( config, campaign, demographics and custom report files)
3. Update snakemake workflow to support both local Eradication and Eradication from Emod-Malaria.
4. Add ggplot images and pdf report

(see details in #18)

v0.1.0

• emodpy_malaria version: 1.1.19
• Eradication version: 2.20.5097.0
• branch: Malaria-Ongoing(6ee63023a)

Fix problem with age bins and use true parasite densities to avoid max boundary problems(see details in #21 and #19 )

v0.0.1

• emodpy_malaria version: 1.1.19
• Eradication version: 2.20.5097.0
• branch: Malaria-Ongoing(6ee63023a)

Support of submitting simulations, running analyzers and download outputs with snakemake workflow.
Plot result from outputs with \create_plots\run_generate_validation_comparisons_site.R and generate report with report\create_pdf_report_3.py