update snakemake rule to work with running from onedrive folder #240

	name: build_test_uhuntu

	on: [push, pull_request, workflow_dispatch]

	jobs:
	build_test:
	runs-on: ubuntu-latest
	if: "!contains(github.event.head_commit.message, '*SKIPBUILD*')"
	strategy:
	max-parallel: 1
	matrix:
	python-version: [ '3.9']

	steps:
	- name: Checkout sources
	uses: actions/checkout@v2
	with:
	token: ${{ secrets.GITHUB_TOKEN }}
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}
	architecture: x64
	- name: Install python pre-reqs
	run: \|
	echo "upgrade pip"
	python3 --version
	python3 -m pip install --upgrade pip
	shell: bash
	# - id: build
	# name: Build package
	# run: \|
	# python3 setup.py bdist_wheel
	# - id: wheel
	# run: python3 ./.github/scripts/get_wheel_filename.py --package-file setup.py --set-gh-actions-var wheel-file
	# shell: bash
	# - id: install
	# name: install package
	# run: \|
	# pip install ${{ steps.wheel.outputs.wheel-file }} --index-url=https://packages.idmod.org/api/pypi/pypi-production/simple
	# # todo: remove this after emodpy-malaria has a new release
	# pip install emod-malaria --index-url=https://packages.idmod.org/api/pypi/pypi-production/simple --force-reinstall --no-cache-dir
	# pip freeze
	- name: installation
	run: \|
	pip install -e . -r requirements.txt
	pip freeze
	- name: run tests
	run: python3 -m unittest discover .
	working-directory: ./tests
	# - name: Add wheel to artifact
	# uses: actions/upload-artifact@v2
	# with:
	# name: idm_test.wheel
	# path: ${{ steps.wheel.outputs.wheel-file }}

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