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Simp vax #13

Merged
merged 11 commits into from
Oct 12, 2023
Merged

Simp vax #13

merged 11 commits into from
Oct 12, 2023

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jonathanhhb
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@jonathanhhb jonathanhhb commented Oct 4, 2023

Added vaccine functions that use SimpleVaccine not TyphoidVaccine. Also added new HINTy example that sets up Rural and Urban HINT groups. Relies on "new old" model branch.

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github-actions bot commented Oct 4, 2023

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github-actions bot commented Oct 5, 2023

Jonathan Bloedow added 2 commits October 5, 2023 15:07
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github-actions bot commented Oct 5, 2023

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github-actions bot commented Oct 5, 2023

model_dl_dir = "stash2"
schema_file=os.path.join(model_dl_dir, "schema.json")
eradication_path=os.path.join(model_dl_dir, "Eradication")
assets_input_dir="Assets"
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Can you check in Assets file under this directory?

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Can we put this file under examples directory so we can share it within examples in different folders?

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github-actions bot commented Oct 6, 2023

"In this series of commits, various enhancements and updates were made to the project. Notably, unittests and workflow tests were added for demographics, alongside the addition of intervention unittests and campaign updates. Several validation improvements were made to demographics unittests, including the introduction of assetcollection IDs for SIF files in 'comps' and 'comps2'. Workflow tests for typhoid vaccine interventions were included, while 'test_demographics_equilibrium_vd_from_worldbank.py' was removed. The Python vaccine tests were expanded and various adjustments were made, including fixing the cutoff day for starting vaccinations, updating vaccine modes, and updating requirements. Further validations were added to 'typhoid_vaccine.py', and coverage sweeps were implemented in vaccine tests. Various code cleanup activities were conducted, such as formatting, imports, and the addition of HINT test cases. Additionally, a login script was added to 'comps', IDm test dependency was removed, and 'outbreak.py' was introduced for interventions. The 'emod-api' version was updated, and additional features like sorting downloaded reporters, GitHub action test scripts, Jenkinsfile updates, and index_url inclusion were implemented." -- ChatGPT
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Passed all tests in Jenkins

@jonathanhhb jonathanhhb merged commit ec50c86 into main Oct 12, 2023
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@jonathanhhb jonathanhhb deleted the simp_vax branch October 12, 2023 00:49
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2 participants