rename the example

InstituteforDiseaseModeling · Nov 13, 2024 · cfa7d96 · cfa7d96
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Showing 6 changed files with 3 additions and 4 deletions.
diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
@@ -33,7 +33,7 @@ jobs:
     - name: Generate Index HTML
       run: |
         ls -laR gallery
-        echo "<html><body><h1>Gallery Index</h1><ul>" > gallery/index.html
+        echo "<html><body><h1>IDM Data Access / Analysis Gallery</h1><ul>" > gallery/index.html
         find gallery -name "*.html" -not -name "index.html" | while read -r file; do
           # Remove the 'gallery/' prefix from the file path
           relative_path="${file#gallery/}"

diff --git a/Dockerfile b/Dockerfile
@@ -51,14 +51,13 @@ RUN add-apt-repository ppa:deadsnakes/ppa && \
 
 # Set up Python virtual environment
 # Install Jupyter, Quarto, and ipykernel
-
-RUN python3 -m pip install jupyterlab jupyterlab-quarto jupyter_contrib_nbextensions quarto-cli ipykernel ipython
 RUN python3.12 -m venv /opt/venv --system-site-packages
 
 ENV PATH="/opt/venv/bin:$PATH"
 
 # Create an IPython kernel for the virtual environment
-RUN /opt/venv/bin/pip install ipykernel
+RUN /opt/venv/bin/pip install --upgrade pip setuptools wheel
+RUN /opt/venv/bin/pip install jupyterlab jupyterlab-quarto jupyter_contrib_nbextensions quarto-cli ipykernel ipython
 RUN /opt/venv/bin/python -m ipykernel install --user --name=venv --display-name "Python 3.12 (venv)"
 
 # Install latest Quarto

diff --git a/r/samples/yl_DHS/simple_plot.html → r/samples/yl_DHS/simple_dhs_fp__plot.html b/r/samples/yl_DHS/simple_plot.html → r/samples/yl_DHS/simple_dhs_fp__plot.html
diff --git a/r/samples/yl_DHS/simple_plot.qmd → r/samples/yl_DHS/simple_dhs_fp_plot.qmd b/r/samples/yl_DHS/simple_plot.qmd → r/samples/yl_DHS/simple_dhs_fp_plot.qmd
diff --git a/r/samples/yl_DHS/simple_plot_files/figure-html/unnamed-chunk-1-1.png b/r/samples/yl_DHS/simple_plot_files/figure-html/unnamed-chunk-1-1.png
diff --git a/r/samples/yl_DHS/simple_plot_files/figure-html/unnamed-chunk-2-1.png b/r/samples/yl_DHS/simple_plot_files/figure-html/unnamed-chunk-2-1.png