add custom html #354
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| name: PACE-HRH Integration Tests | |
| # This job is used for all non-unit tests | |
| on: | |
| # todo: we need to decide later if these tests are only run on releases | |
| pull_request: | |
| branches: | |
| - "**" | |
| jobs: | |
| install: | |
| runs-on: windows-latest | |
| strategy: | |
| matrix: | |
| R: [ '4.4' ] | |
| defaults: | |
| run: | |
| working-directory: . | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.R }} | |
| - name: Install devtools | |
| run: | | |
| Rscript -e "options(install.packages.compile.from.source = 'never'); install.packages('devtools')" | |
| - name: Install pandoc | |
| uses: crazy-max/ghaction-chocolatey@v2 | |
| with: | |
| args: install pandoc | |
| - name: Setup Dependency | |
| working-directory: 'tests/setup' | |
| run: | | |
| Rscript install_dep_for_tests.R | |
| - name: Install packages | |
| # todo: using Readme instruction to install package | |
| run: | | |
| Rscript -e "install.packages('httpuv', build = FALSE, type = 'win.binary')" | |
| Rscript -e "devtools::install_local('pacehrh', force=TRUE, upgrade='always', repos = NULL, build=TRUE, dependencies=TRUE)" | |
| shell: cmd | |
| - name: Run Integration tests | |
| run: | | |
| Rscript -e "testthat::test_dir('tests/testthat/')" | |
| if errorlevel 1 echo "::error:: Integration tests failed" && exit 1 | |
| shell: cmd | |
| continue-on-error: false | |
| env: | |
| NOT_CRAN: true | |
| - name: Check input spreadsheet | |
| run: | | |
| Rscript -e "rmarkdown::render('config/validation/validation_report.Rmd', 'html_document', params=list(inputFile='config/model_inputs.xlsx', outputDir='log'), output_dir='.')" | |
| if errorlevel 1 "::error:: Validate Input failed" && exit 1 | |
| shell: cmd | |
| continue-on-error: false | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: validation-results | |
| path: | | |
| log | |
| validation_report.html |