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[BF]: updated installation instructions
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alexpron committed Jul 18, 2024
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Expand Up @@ -18,9 +18,13 @@ Optionally, rename the `.env.example` to `.env` and set the variables (`shanoir_

### Installation with conda
> [!IMPORTANT]
> This installation is required if shanoir2bids.py is used
> This installation method is required if shanoir2bids.py is used
After installing a (mini)conda distribution type in a terminal `conda create -f environment.yml` then activate the environment using `conda activate working-env` where `working-env` is the default name of the created environment
In an active conda virtual environment type
```
pip install .
conda install -c conda-forge heudiconv git-annex=*=alldep* datalad
```
## Usage

There are three scripts to download datasets:
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