Merge pull request #27 from alexpron/hotfix-issue#26 #6

	name: Python installation

	on: [push]

	jobs:
	build:
	strategy:
	matrix:
	os: [ubuntu-latest]
	python-version: ["3.8", "3.9", "3.10"]
	#TODO: use github action to read python version from pyproject.toml
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- name: Setup Python
	uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	activate-environment: working-env
	python-version: ${{ matrix.python-version }}
	auto-activate-base: false
	- name: Install dependencies
	shell: bash -el {0}
	run: \|
	conda install -c conda-forge -c https://conda.anaconda.org/simpleitk SimpleITK brotli bids-validator certifi charset-normalizer dicom-anonymizer idna importlib-metadata 'numpy<2.0' pandas py7zr pybcj pycryptodomex pyppmd pytz pydicom python-dotenv python-dateutil requests six texttable tqdm typing_extensions urllib3 zipp pydicom dicom2nifti Pillow heudiconv git-annex==alldep datalad

	# Create virtual env under each python version
	# (optional and a bit redundant because we are already on a specific python)
	# it insures installation instruction provided in README are working
	# - name: Test with pytest
	# run: pytest tests.py --doctest-modules --junitxml=junit/test-results-${{ matrix.python-version }}.xml
	# - name: Upload pytest test results
	# uses: actions/upload-artifact@v4
	# with:
	# name: pytest-results-${{ matrix.python-version }}
	# path: junit/test-results-${{ matrix.python-version }}.xml
	# # Use always() to always run this step to publish test results when there are test failures
	# if: ${{ always() }}

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