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J7F9 refactorisation #80

Merged
merged 47 commits into from
Jan 5, 2024
Merged

J7F9 refactorisation #80

merged 47 commits into from
Jan 5, 2024

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bclenet
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@bclenet bclenet commented Aug 30, 2023

This Pull Request is related to issue #79

Changes proposed in this Pull Request:

  • Refactorisation of the J7F9 pipeline
  • Solving unsufficient correlation results for hypotheses 6 and 8

Checklist:

  • Descriptive title
  • Targets the main branch
  • Changes are functional
  • My code is explicit and comments were added to it
  • Code conforms with PEP8
  • Tests were added for the changes and they complete successfully
  • Existing tests were updated (if needed) and they complete successfully
  • Documentation was updated

bclenet and others added 30 commits March 29, 2023 11:34
@bclenet
[REFAC] pipeline J7F9 to conform with the Pipeline class
15f09ac
@bclenet
[TEST] init a test for conftest.py
360dcd0
@bclenet
Merge branch 'main' into j7f9_refac
e627174
@bclenet
[REFAC] adding analyses outputs
2b45a48
@bclenet
[TEST] updating tests for J7F9
ae59600
@bclenet
Cleaning connections
4b7e831
@bclenet
[TEST] bug with pipelines/test_utils
2d1739a
@bclenet
[BUG] issue with iterating over dicts
678adfe
@bclenet
[BUG] replace mkdir by makedirs in get_parameters
4bd3ab5
@bclenet
Merge branch 'main' into j7f9_refac
4879073
@bclenet
[BUG] inside unit_tests workflow
6986e90
@bclenet
Merge branch 'Inria-Empenn:main' into main
d6e67f3
@bclenet
Merge branch 'main' into j7f9_refac
f88da86
@bclenet
Merge branch 'main' into conftest_testing
691a039
@bclenet
[TEST] testing the conftest module
0f8365a
@bclenet
Merge branch 'conftest_testing' into j7f9_refac
9789e36
@bclenet
Merge branch 'Inria-Empenn:main' into main
c3bfc53
@bclenet
Merge branch 'main' into j7f9_refac
7d96a18
@bclenet
Merge branch 'Inria-Empenn:main' into main
4b30504
@bclenet
Merge branch 'Inria-Empenn:main' into main
fd15ffc
@bclenet
Merge branch 'Inria-Empenn:main' into main
6ebe5d2
@bclenet
Merge branch 'Inria-Empenn:main' into main
0a584dd
@bclenet
Merge branch 'Inria-Empenn:main' into main
e284b80
@bclenet
Merge branch 'Inria-Empenn:main' into main
5774813
@bclenet
Merge branch 'Inria-Empenn:main' into main
8f12d3d
@bclenet
Merge branch 'Inria-Empenn:main' into main
91dc744
@bclenet
Merge branch 'Inria-Empenn:main' into main
c03e9d1
@bclenet
Merge branch 'Inria-Empenn:main' into main
fe0d25b
@bclenet
Merge branch 'Inria-Empenn:main' into main
04d5ff2
@bclenet
Merge branch 'main' into j7f9_refac
e0c51e5
bclenet and others added 17 commits January 3, 2024 14:20
@bclenet
[REFAC] [skip ci]
afae43e
@bclenet
[TEST] test get_confounds method [skip ci]
81cfbae
@bclenet
[TEST] test get_confounds method [skip ci]
3f7441c
@bclenet
[PEP8] [skip ci]
9b759df
@bclenet
[BUG] runs inputs of get_subject_information no longer needed [skip ci]
4ec1cf6
@bclenet
[BUG] get_confounds input [skip ci]
2dd6525
@bclenet
[BUG] get_confounds input [skip ci]
ccb6cd7
@bclenet
Cleaning code [skip ci]
015e9c7
@bclenet
[BUG] real subject ids for search patterns [skip ci]
e2bdee4
@bclenet
Consistent Bunches along runs as output of subject_information [skip ci]
cfa7279
@bclenet
[BUG] with subject_information Bunch [skip ci]
4f5ff0a
@bclenet
Bug with group level [skip ci]
a9ab13a
@bclenet
Remove large files earlier in the process [skip ci]
fc37fda
@bclenet
[TEST] exhaustive testing of get_subject_information for J7F9 [skip ci]
7a03d52
@bclenet
Merge branch 'Inria-Empenn:main' into main
c9ee889
@bclenet
Merge branch 'main' into j7f9_refac [skip ci]
a06cd8b
@bclenet
[BUG] get_contrasts_2 iterfield [skip ci]
b2dd381
@bclenet bclenet merged commit 6e48177 into Inria-Empenn:main Jan 5, 2024
@bclenet bclenet mentioned this pull request Jan 5, 2024
Closed
9 tasks
@bclenet bclenet deleted the j7f9_refac branch January 31, 2024 14:23
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