Contrasts naming

Inria-Empenn · Apr 9, 2024 · bd835ca · bd835ca
1 parent 20a8cae
commit bd835ca
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/narps_open/pipelines/team_3TR7.py b/narps_open/pipelines/team_3TR7.py
@@ -442,7 +442,7 @@ def get_group_level_analysis_group_comparison(self):
         # Select files from subject level analysis
         templates = {
             'contrasts': join(self.directories.output_dir,
-                'subject_level', '_subject_id_*', 'con_{contrast_id}.nii'),
+                'subject_level', '_subject_id_*', 'scon_{contrast_id}.nii'),
             #'mask': join('derivatives/fmriprep/gr_mask_tmax.nii')
             }
         select_files = Node(SelectFiles(templates), name = 'select_files')
@@ -523,6 +523,7 @@ def get_group_level_analysis_group_comparison(self):
         threshold.inputs.force_activation = False
         threshold.inputs.height_threshold = 0.05
         threshold.inputs.contrast_index = 1
+        threshold.inputs.extent_threshold = 5
 
         # Create the group level workflow
         group_level_analysis = Workflow(