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[narps_open_pipelines#220][94GU] correct code spells
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youennmerel committed Dec 18, 2024
1 parent e30dc86 commit 7dfb2e6
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions narps_open/pipelines/team_94GU.py
Original file line number Diff line number Diff line change
Expand Up @@ -61,7 +61,7 @@ def get_preprocessing(self):
"""
Preprocessing workflow
1) Fieldmap distorsion calculation;
1) Fieldmap distortion calculation;
2) functional Realignment & unwarp & phase correction (subject motion estimation and correction);
3) functional Indirect Segmentation & Normalization (
coregister functional/structural;
Expand Down Expand Up @@ -100,7 +100,7 @@ def get_preprocessing(self):
preprocessing.connect(select_files, 'magnitude', fieldmap_infos, 'magnitude_files')
# Unzip magnitude file

# FIELDMAP DISTORSION CALCULATION
# FIELDMAP DISTORTION CALCULATION
# inputs : echo_times + magnitude_file + phase_diff + func
fieldmap = self.get_fieldmap()
preprocessing.connect(fieldmap_infos, 'echo_times', fieldmap, 'echo_times')
Expand Down Expand Up @@ -194,7 +194,7 @@ def extract_fieldmap_infos(info_file, magnitude_files):

def get_fieldmap(self):
"""
FieldMap() node for fieldmap distorsion calculation;
FieldMap() node for fieldmap distortion calculation;
"""

# FieldMap Node -
Expand All @@ -205,7 +205,7 @@ def get_fieldmap(self):

def get_motion_correction(self) -> Node:
"""
RealignUnwarp() node for func motion correction, distorsion correction
RealignUnwarp() node for func motion correction, distortion correction
Motion correction was performed in SPM12 (realign and unwarp and the fielmap toolbox).
Default parameters were used:
Expand Down Expand Up @@ -248,7 +248,7 @@ def get_coregistration(self) -> Node:
Coregister() node for anat/func coregistration
Coregistration was performed in SPM12 (coregister: estimate and reslice). Type of
transformation: rigid body model. Cost function = mutual infrormation. Interpolation
transformation: rigid body model. Cost function = mutual information. Interpolation
method = B-spline.
"""
node = Node(interface=Coregister(), name="coregistration")
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