[BUG] smoothing outputs

Inria-Empenn · Feb 26, 2024 · 5ffd5d9 · 5ffd5d9
1 parent d7ba0e7
commit 5ffd5d9
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/narps_open/pipelines/__init__.py b/narps_open/pipelines/__init__.py
@@ -66,7 +66,7 @@
     'R42Q': None,
     'R5K7': None,
     'R7D1': None,
-    'R9K3': 'PipelineTeam08MQ',
+    'R9K3': 'PipelineTeamR9K3',
     'SM54': None,
     'T54A': 'PipelineTeamT54A',
     'U26C': 'PipelineTeamU26C',

diff --git a/narps_open/pipelines/team_R9K3.py b/narps_open/pipelines/team_R9K3.py
@@ -105,9 +105,9 @@ def get_preprocessing_outputs(self):
 
         output_dir = join(self.directories.output_dir, 'preprocessing', '_subject_id_{subject_id}')
 
-        # Smoothing outputs # TODO
+        # Smoothing outputs
         templates = [join(output_dir, f'_smoothing{index}',
-            'srsub-{subject_id}'+f'_task-MGT_run-{run_id}_bold.nii')\
+            'ssub-{subject_id}'+f'_task-MGT_run-{run_id}_bold.nii')\
             for index, run_id in zip(range(len(self.run_list)), self.run_list)]
 
         # Format with subject_ids
@@ -229,7 +229,7 @@ def get_subject_level_analysis(self):
             'confounds' : join('derivatives', 'fmriprep', 'sub-{subject_id}', 'func',
                 'sub-{subject_id}_task-MGT_run-*_bold_confounds.tsv'),
             'func' : join(self.directories.output_dir, 'preprocessing', '_subject_id_{subject_id}',
-                '_smoothing*', 'srsub-{subject_id}_task-MGT_run-*_bold.nii'), # TODO
+                '_smoothing*', 'ssub-{subject_id}_task-MGT_run-*_bold.nii'),
             'event' : join('sub-{subject_id}', 'func',
                 'sub-{subject_id}_task-MGT_run-*_events.tsv'),
         }