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Initial draft of new quantum yield module #267

Merged
merged 31 commits into from
Sep 6, 2024
Merged

Initial draft of new quantum yield module #267

merged 31 commits into from
Sep 6, 2024

Commits on Jul 25, 2024

  1. Initial draft of new quantum yield module: some mypy issues

    @davidorme
    davidorme committed Jul 25, 2024
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  2. Fixing typing and other issues

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    davidorme committed Jul 25, 2024
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  3. Regression test for QuantumYieldSandoval

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    davidorme committed Jul 25, 2024
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  4. Simpler sandoval test data set and test fixes

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    davidorme committed Jul 25, 2024
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Commits on Jul 31, 2024

  1. Added sandoval parameters to PModelConsts, update regresssion test va… 

    …lues
    @davidorme
    davidorme committed Jul 31, 2024
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  2. Rework reference code files, initial unit test suite

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    davidorme committed Jul 31, 2024
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  3. Added use of QuantumYield registry to tests

    @davidorme
    davidorme committed Jul 31, 2024
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  4. Use QuantumYieldABC implementation in PModel ! SubdailyPModel not imp… 

    …lemented
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    davidorme committed Jul 31, 2024
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  5. Use QuantumYieldABC implementation in PModel ! SubdailyPModel not imp… 

    …lemented
    @davidorme
    davidorme committed Jul 31, 2024
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  6. Moving C3/C4 handling within different kphio approaches ! Subdaily st… 

    …ill not updated
    @davidorme
    davidorme committed Jul 31, 2024
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Commits on Aug 1, 2024

  1. QuantumYield should inherit constants from PModelEnvironment, not dir… 

    …ectlyas an argument ! Subdaily still not updated
    @davidorme
    davidorme committed Aug 1, 2024
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  2. Updating subdaily

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    davidorme committed Aug 1, 2024
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  3. Better R in sandoval_kphio

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    davidorme committed Aug 1, 2024
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  4. pytest importlib mode not behaving: pytest-dev/pytest#11475

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    davidorme committed Aug 1, 2024
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  5. doctest output format fixes

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    davidorme committed Aug 1, 2024
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Commits on Aug 2, 2024

  1. Updating new approach to handle arrays of kphio values with QuantumYi… 

    …eldFixed
    @davidorme
    davidorme committed Aug 2, 2024
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  2.  Cleaner calculation of kphio in subdaily P model, mypy fixes

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    davidorme committed Aug 2, 2024
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  3. Rethink of SubdailyPModel behaviour with array kphio

    @davidorme
    davidorme committed Aug 2, 2024
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  4. Refixing doctests - local numpy outdated

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    davidorme committed Aug 2, 2024
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Commits on Aug 6, 2024

  1. Doc updates

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    davidorme committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. P model user docs update

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    davidorme committed Aug 7, 2024
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  2. Fixing issue with typed but not populated attributes in summarise

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    davidorme committed Aug 7, 2024
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  3. Doc fixing and notebook updates

    @davidorme
    davidorme committed Aug 7, 2024
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  4. Docstring update for quantum yield

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    davidorme committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. Replacing and removing the calc_ftemp_kphio and calc_ftemp_inst_vcmax… 

    … functions
    @davidorme
    davidorme committed Aug 8, 2024
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  2. Working out how to pass around arrhenius mode cleanly

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    davidorme committed Aug 8, 2024
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  3. Fixes from @j-emberton and then test and doctest snagging

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    davidorme committed Aug 8, 2024
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  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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    pre-commit-ci[bot] committed Aug 8, 2024
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  5. Do _not_ jupytext the Sphinx conf.py

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    davidorme committed Aug 8, 2024
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  6. Merge branch 'develop' into 266-additional-kphio-method-using-aridity… 

    …-and-temperature
    @davidorme
    davidorme authored Aug 8, 2024
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Commits on Sep 6, 2024

  1. Merge branch 'develop' into 266-additional-kphio-method-using-aridity… 

    …-and-temperature
    @davidorme
    davidorme authored Sep 6, 2024
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