Res-Dom

predict protein domain boundary from sequence alone using deep residual network and Bi-LSTM

Required tools

Package                Version             
---------------------- --------------------
esm                    0.1.0               
Keras                  2.2.0               
numpy                  1.19.1              
tensorflow-gpu         1.8.0               
torch                  1.6.0   
scikit-learn           1.0.0            

Dataset

The training data was collected from CATH(V4.1) and the independent testing datasets were derived from the CATH(V4.3).

Test

cd sample/
python predict.py

The trained models

model file: sample/res-dom.h5

The training scripts

Scripts for training deep learning model:

model_train/model_train.py

• Note: the training data path should change to your local path.

License

MIT

Contact

If you have any questions, comments, or would like to report a bug, please file a Github issue or contact me at [email protected].