added as ORG choice so that you don't have to modify the script, it c…

…an be run as runBUSCO_genome.sh genome.fasta metazoa
ISUgenomics · Sep 17, 2016 · 4ed8f3b · 4ed8f3b
1 parent 0a2f26f
commit 4ed8f3b
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/runBUSCO_genome.sh b/runBUSCO_genome.sh
@@ -11,7 +11,7 @@
 #####################################
 #
 #
-ORG=arthropoda
+#ORG=arthropoda
 #ORG=bacteria
 #ORG=eukaryota
 #ORG=fungi
@@ -25,6 +25,7 @@ ORG=arthropoda
 module use /shared/software/GIF/modules
 module load busco/1.2
 genome="$1"
+ORG="$2"
 outname=$(basename ${genome%.*})
 python3 ${BUSCO_HOME}/busco.py \
   -o ${outname} \