First version of the multiplate export / download of experiments. #380
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Run tests | |
| on: | |
| workflow_dispatch: | |
| pull_request_target: | |
| branches: [ main ] | |
| types: [opened, synchronize, reopened, labeled] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: [3.9, 3.11] | |
| # Only one job at a time to avoid parallel access of test server | |
| max-parallel: 1 | |
| if: (contains(github.event.pull_request.labels.*.name, 'safe to test') || (github.event_name == 'workflow_dispatch')) | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Update pip | |
| run: | | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| python -m pip install --user --upgrade pip | |
| else | |
| pip install --upgrade pip | |
| fi | |
| shell: bash | |
| - name: Install package | |
| run: | | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| pip install --user .[test] | |
| else | |
| pip install .[test] | |
| fi | |
| shell: bash | |
| - name: Test with pytest | |
| env: | |
| REDCAP_API_TOKEN: ${{ secrets.REDCAP_API_TOKEN }} | |
| ELAB_API_TOKEN: ${{ secrets.ELAB_API_TOKEN }} | |
| shell: bash | |
| run: | | |
| # change directory to test installed and not local version | |
| ls -lh | |
| pwd | |
| cd .. | |
| pytest ${{ github.event.repository.name }} | |
| run-coverall: | |
| runs-on: [ubuntu-latest] | |
| needs: build | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Setup Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Update pip | |
| run: | | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| python -m pip install --user --upgrade pip | |
| else | |
| pip install --upgrade pip | |
| fi | |
| shell: bash | |
| - name: Install package | |
| run: | | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| pip install --user .[test] | |
| else | |
| pip install .[test] | |
| fi | |
| shell: bash | |
| - name: Install Python test dependencies | |
| run: pip install --user coveralls | |
| - name: Create coverage | |
| env: | |
| REDCAP_API_TOKEN: ${{ secrets.REDCAP_API_TOKEN }} | |
| ELAB_API_TOKEN: ${{ secrets.ELAB_API_TOKEN }} | |
| shell: bash | |
| run: | | |
| # change directory to test installed and not local version | |
| cd .. | |
| coverage run -m pytest ${{ github.event.repository.name }} | |
| - name: Submit to coveralls | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: coveralls --service=github |