refactor jsonld validation

.github/workflows/validate.yml

@@ -3,47 +3,27 @@ name: validate jsonld
 on:
   push:
     branches:
-      - master
       - main
-      - dev
   pull_request:
     branches: '*'
 
 jobs:
-  build:
-    runs-on: ubuntu-latest
-
+  validate:
     if: github.repository_owner == 'INCF'
-
-    # Steps represent a sequence of tasks that will be executed as part of the job
+    runs-on: ubuntu-latest
     steps:
-      - name: Setup Node
+    -   uses: actions/checkout@v4
+    -   name: Setup Node
         uses: actions/setup-node@v4
         with:
-          node-version: "12.x"
-
-      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-      - uses: actions/checkout@v4
-
-      # Checks that our JSON are valid
-      - name: Check for syntax errors
-        run: |
-          npm install -g jsonlint
-          grep -r  "@context" schemas | cut -d: -f1 | xargs -I fname jsonlint -q fname
-
-      # Checks that the schemas are valid
-      - name: Set up Python
+            node-version: 20.x
+    -   name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.8
-
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip setuptools
-          pip install reproschema requests_cache
-
-      - name: Test with pyshacl
+            python-version: 3.12
+    -   name: Install dependencies
         run: |
-          reproschema -l DEBUG validate schemas/artemis/protocols
-          reproschema -l DEBUG validate schemas/artemis/activities
-          reproschema -l DEBUG validate schemas/artemis/artemis_schema.jsonld
+            python -m pip install --upgrade pip setuptools
+            pip install reproschema
+    -   name: validate
+        run: make validate

.pre-commit-config.yaml

@@ -6,6 +6,7 @@ repos:
     hooks:
     -   id: trailing-whitespace
     -   id: check-yaml
+    -   id: check-json
     -   id: check-added-large-files
 
 -   repo: https://github.com/psf/black

Makefile

@@ -1,6 +1,3 @@
-.PHONY:
-
-
 INPUT_DIR = $(inputs/tsv)
 
 ARTEMIS_TSV =   $(wildcard inputs/tsv/*.tsv)
@@ -16,6 +13,21 @@ download:
 convert: download
 	python convert_table/src/convert.py
 
-
 clean_artemis:
 	rm -rf $(ARTEMIS_TSV)
+
+validate: validate_syntax validate_schema
+
+package.json:
+	npm install `cat npm-requirements.txt`
+
+# Validate jsonld
+validate_syntax: package.json
+	grep -r  "@context" response_options | cut -d: -f1 | xargs -I fname jsonlint -q fname
+	grep -r  "@context" schemas | cut -d: -f1 | xargs -I fname jsonlint -q fname
+
+# you will need to install reproschema-py to run this one ( pip install reproschema )
+validate_schema:
+	reproschema -l DEBUG validate artemis_schema/schemas/artemis/activities
+	reproschema -l DEBUG validate artemis_schema/schemas/artemis/protocols
+	reproschema -l DEBUG validate artemis_schema/schemas/artemis/artemis_schema.jsonld