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Write $(SRCMERGED) in OFN format. #1108

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merged 1 commit into from
Oct 18, 2024
Merged

Write $(SRCMERGED) in OFN format. #1108

merged 1 commit into from
Oct 18, 2024

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gouttegd
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Make sure the $(SRCMERGED) intermediate file is always written in OFN format, rather than in the same format than the -edit file.

If $(SRCMERGED) is written in OBO format, this can cause some checks made on that file to fail because of some peculiarities of the OBO serialisation that do not accurately reflect the contents of the original -edit file.

closes #1107

Make sure the $(SRCMERGED) intermediate file is always written in OFN
format, rather than in the same format than the -edit file.

If $(SRCMERGED) is written in OBO format, this can cause some checks
made on that file to fail because of some peculiarities of the OBO
serialisation that do not accurately reflect the contents of the
original -edit file.

closes #1107
@gouttegd gouttegd self-assigned this Oct 18, 2024
@gouttegd
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@matentzn Not going to merge this one without your input on it, even if it has to wait.

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makes sense, this is in the spirit of what we did for EDITPREPROCESSED

@gouttegd gouttegd merged commit b4cbdc3 into master Oct 18, 2024
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@gouttegd gouttegd deleted the use-ofn-for-srcmerged branch October 18, 2024 18:13
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Successfully merging this pull request may close these issues.

Failure of -obo-report.tsv induced by OBO serialisation quirks
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