Merge pull request #915 from INCATools/create-pull-request/patch

Update constraints.txt

constraints.txt

@@ -4,7 +4,7 @@ annotated-types==0.5.0
 antlr4-python3-runtime==4.9.3
 anyio==3.7.1
 appdirs==1.4.4
-argon2-cffi==21.3.0
+argon2-cffi==23.1.0
 argon2-cffi-bindings==21.2.0
 arrow==1.2.3
 asttokens==2.2.1
@@ -26,7 +26,7 @@ CFGraph==0.2.1
 chardet==5.2.0
 charset-normalizer==3.2.0
 class-resolver==0.4.2
-click==8.1.6
+click==8.1.7
 colorama==0.4.6
 comm==0.1.4
 commonmark==0.9.1
@@ -58,13 +58,13 @@ fastjsonschema==2.18.0
 fastobo==0.12.2
 filelock==3.12.2
 flake8==6.1.0
-fonttools==4.42.0
+fonttools==4.42.1
 fqdn==1.5.1
 funowl==0.2.3
 ghp-import==2.1.0
 google==3.0.0
 google-api-core==2.11.1
-google-api-python-client==2.96.0
+google-api-python-client==2.97.0
 google-auth==2.22.0
 google-auth-httplib2==0.1.0
 google-auth-oauthlib==1.0.0
@@ -113,7 +113,7 @@ jupyter-events==0.7.0
 jupyter-lsp==2.2.0
 jupyter_client==8.3.0
 jupyter_core==5.3.1
-jupyter_server==2.7.0
+jupyter_server==2.7.2
 jupyter_server_terminals==0.4.4
 jupyterlab==4.0.5
 jupyterlab-pygments==0.2.2
@@ -126,7 +126,7 @@ kgx==1.7.2
 kiwisolver==1.4.4
 lark==1.1.7
 lightrdf==0.3.1
-linkml==1.5.6
+linkml==1.5.7
 linkml-dataops==0.1.0
 linkml-renderer==0.3.0
 linkml-runtime==1.5.6
@@ -149,10 +149,10 @@ mkdocs-mermaid2-plugin==0.6.0
 mkdocs-table-reader-plugin==2.0.1
 more-click==0.1.2
 more-itertools==10.1.0
-mypy==1.5.0
+mypy==1.5.1
 mypy-extensions==1.0.0
 nbclient==0.8.0
-nbconvert==7.7.3
+nbconvert==7.7.4
 nbformat==5.9.2
 ndex2==3.5.1
 neo4j==4.3.0
@@ -161,7 +161,7 @@ networkx==3.1
 notebook==7.0.2
 notebook_shim==0.2.3
 numpy==1.25.2
-oaklib==0.5.15
+oaklib==0.5.16
 oauthlib==3.2.2
 ols-client==0.1.4
 ontobio==2.8.8
@@ -183,16 +183,16 @@ pickleshare==0.7.5
 Pillow==10.0.0
 pkginfo==1.9.6
 platformdirs==3.10.0
-plotly==5.16.0
+plotly==5.16.1
 pluggy==1.2.0
 ply==3.11
 prefixcommons==0.1.12
 prefixmaps==0.1.5
 prologterms==0.0.6
 prometheus-client==0.17.1
 prompt-toolkit==3.0.39
-pronto==2.5.4
-protobuf==4.24.0
+pronto==2.5.5
+protobuf==4.24.1
 psutil==5.9.5
 ptyprocess==0.7.0
 pure-eval==0.2.2
@@ -201,8 +201,8 @@ pyasn1==0.5.0
 pyasn1-modules==0.3.0
 pycodestyle==2.11.0
 pycparser==2.21
-pydantic==2.1.1
-pydantic_core==2.4.0
+pydantic==2.2.1
+pydantic_core==2.6.1
 pydotplus==2.0.2
 pyflakes==3.1.0
 PyGithub==1.59.1
@@ -232,7 +232,7 @@ ratelimit==2.2.1
 rdflib==7.0.0
 rdflib-jsonld==0.6.1
 rdflib-shim==1.0.3
-readme-renderer==40.0
+readme-renderer==41.0
 recommonmark==0.7.1
 referencing==0.30.2
 regex==2023.8.8
@@ -249,10 +249,10 @@ rpds-py==0.9.2
 rsa==4.9
 ruamel.yaml==0.17.32
 ruamel.yaml.clib==0.2.7
-scipy==1.11.1
+scipy==1.11.2
 seaborn==0.12.2
 SecretStorage==3.3.3
-semsimian==0.1.18
+semsimian==0.2.0
 semsql==0.3.2
 Send2Trash==1.8.2
 ShExJSG==0.8.2
@@ -264,23 +264,23 @@ soupsieve==2.4.1
 sparqlslurper==0.5.1
 SPARQLWrapper==2.0.0
 Sphinx==5.3.0
-sphinx-click==4.4.0
+sphinx-click==5.0.1
 sphinx-rtd-theme==1.2.2
-sphinxcontrib-applehelp==1.0.6
-sphinxcontrib-devhelp==1.0.4
-sphinxcontrib-htmlhelp==2.0.3
+sphinxcontrib-applehelp==1.0.7
+sphinxcontrib-devhelp==1.0.5
+sphinxcontrib-htmlhelp==2.0.4
 sphinxcontrib-jquery==4.1
 sphinxcontrib-jsmath==1.0.1
-sphinxcontrib-qthelp==1.0.5
-sphinxcontrib-serializinghtml==1.1.7
-SQLAlchemy==2.0.19
+sphinxcontrib-qthelp==1.0.6
+sphinxcontrib-serializinghtml==1.1.9
+SQLAlchemy==2.0.20
 SQLAlchemy-Utils==0.38.3
 sssom==0.3.40
 sssom-schema==0.15.0
 stack-data==0.6.2
 stringcase==1.2.0
 tabulate==0.9.0
-tenacity==8.2.2
+tenacity==8.2.3
 termcolor==2.3.0
 terminado==0.17.1
 terminaltables==3.1.10