Merge pull request #1123 from INCATools/create-pull-request/patch

constraints.txt

@@ -11,12 +11,11 @@ asttokens==2.4.1
 async-lru==2.0.4
 attrs==24.2.0
 babel==2.16.0
-babelon==0.2.9
-backports.tarfile==1.2.0
+babelon==0.3.1
 bcp47==0.1.0
 beautifulsoup4==4.12.3
 bidict==0.23.1
-bleach==6.1.0
+bleach==6.2.0
 bmt==1.4.4
 cachetools==5.5.0
 cattrs==24.1.2
@@ -25,7 +24,7 @@ cffi==1.17.1
 CFGraph==0.2.1
 chardet==5.2.0
 charset-normalizer==3.4.0
-class_resolver==0.5.2
+class_resolver==0.5.4
 click==8.1.7
 click-default-group==1.2.4
 colorama==0.4.6
@@ -54,7 +53,6 @@ dosdp==0.1.10.dev1
 EditorConfig==0.12.4
 et_xmlfile==2.0.0
 eutils==0.6.0
-exceptiongroup==1.2.2
 executing==2.1.0
 fastjsonschema==2.20.0
 fastobo==0.12.3
@@ -64,8 +62,8 @@ fqdn==1.5.1
 funowl==0.2.3
 ghp-import==2.1.0
 google==3.0.0
-google-api-core==2.21.0
-google-api-python-client==2.149.0
+google-api-core==2.22.0
+google-api-python-client==2.151.0
 google-auth==2.35.0
 google-auth-httplib2==0.2.0
 google-auth-oauthlib==1.2.1
@@ -99,7 +97,7 @@ jeepney==0.8.0
 Jinja2==3.1.4
 jinjanator==24.4.0
 jinjanator-plugins==24.2.0
-jiter==0.6.1
+jiter==0.7.0
 jsbeautifier==1.15.1
 jsobject==0.10.2
 json-flattener==0.1.9
@@ -144,7 +142,7 @@ lxml==5.3.0
 Markdown==3.7
 markdown-it-py==3.0.0
 MarkupSafe==3.0.2
-marshmallow==3.23.0
+marshmallow==3.23.1
 matplotlib==3.9.2
 matplotlib-inline==0.1.7
 matplotlib-venn==1.1.1
@@ -153,9 +151,9 @@ mergedeep==1.3.4
 mistune==3.0.2
 mkdocs==1.6.1
 mkdocs-get-deps==0.2.0
-mkdocs-material==9.5.42
+mkdocs-material==9.5.43
 mkdocs-material-extensions==1.3.1
-mkdocs-mermaid2-plugin==1.1.1
+mkdocs-mermaid2-plugin==1.2.1
 mkdocs-table-reader-plugin==3.1.0
 more-click==0.1.2
 more-itertools==10.5.0
@@ -165,7 +163,7 @@ nbclient==0.10.0
 nbconvert==7.16.4
 nbformat==5.10.4
 ndex2==3.9.0
-neo4j==5.25.0
+neo4j==5.26.0
 nest-asyncio==1.6.0
 networkx==3.4.2
 nh3==0.2.18
@@ -179,7 +177,7 @@ ontobio==2.9.10
 ontodev-cogs==0.3.3
 ontodev-gizmos==0.3.2
 ontoportal-client==0.0.4
-openai==1.52.2
+openai==1.53.0
 openpyxl==3.1.5
 ordered-set==4.1.0
 overrides==7.7.0
@@ -220,7 +218,7 @@ PyGithub==2.4.0
 Pygments==2.18.0
 PyJSG==0.11.10
 PyJWT==2.9.0
-pymdown-extensions==10.11.2
+pymdown-extensions==10.12
 PyNaCl==1.5.0
 pyparsing==2.4.7
 pyproject-api==1.8.0
@@ -256,8 +254,8 @@ rfc3339-validator==0.1.4
 rfc3986==2.0.0
 rfc3986-validator==0.1.1
 rfc3987==1.3.8
-rich==13.9.3
-rpds-py==0.20.0
+rich==13.9.4
+rpds-py==0.20.1
 rsa==4.9
 ruamel.yaml==0.18.6
 ruamel.yaml.clib==0.2.12
@@ -267,6 +265,7 @@ SecretStorage==3.3.3
 semsimian==0.2.19
 semsql==0.3.3
 Send2Trash==1.8.3
+setuptools==75.3.0
 ShExJSG==0.8.2
 six==1.16.0
 sniffio==1.3.1
@@ -297,7 +296,6 @@ termcolor==2.5.0
 terminado==0.18.1
 terminaltables==3.1.10
 tinycss2==1.4.0
-tomli==2.0.2
 tornado==6.4.1
 tox==4.23.2
 tqdm==4.66.6
@@ -314,12 +312,13 @@ uritemplate==4.1.1
 url-normalize==1.4.3
 urllib3==2.2.3
 validators==0.20.0
-virtualenv==20.27.0
-watchdog==5.0.3
+virtualenv==20.27.1
+watchdog==6.0.0
 wcwidth==0.2.13
 webcolors==24.8.0
 webencodings==0.5.1
 websocket-client==1.8.0
+wheel==0.44.0
 widgetsnbextension==4.0.13
 wrapt==1.16.0
 xmltodict==0.13.0