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Update ref.smk (just for testing purpose)
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added a check for openssl version
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vBassewitz authored Dec 18, 2024
1 parent 08b80c0 commit b977c77
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion workflow/rules/ref.smk
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ rule get_genome:
ncbi_api_requests=1,
shell:
"((esearch -db nucleotide -query '{params.accession}' | "
"efetch -format fasta > {output}) && [ -s {output} ]) 2> {log}"
"efetch -format fasta > {output}) && openssl version && [ -s {output} ]) 2> {log}"


rule get_genome_annotation:
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