fix calculation (#646)

IKIM-Essen · Apr 16, 2024 · 186926b · 186926b
1 parent 07d6fe2
commit 186926b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/scripts/generate-overview-table.py b/workflow/scripts/generate-overview-table.py
@@ -78,7 +78,7 @@ def is_patient_report():
             number_reads = json.load(infile)["summary"]["before_filtering"][
                 "total_reads"
             ]
-    data.loc[sample, "Raw Reads (#)"] = int(int(number_reads) / 2)
+    data.loc[sample, "Raw Reads (#)"] = int(number_reads)
 
 # add numbers of trimmed reads
 for sample, file in iter_with_samples(snakemake.input.reads_trimmed):
@@ -90,7 +90,7 @@ def is_patient_report():
             number_reads = json.load(infile)["summary"]["after_filtering"][
                 "total_reads"
             ]
-    data.loc[sample, "Trimmed Reads (#)"] = int(int(number_reads) / 2)
+    data.loc[sample, "Trimmed Reads (#)"] = int(number_reads)
 
 # add numbers of reads used for assembly
 for sample, file in iter_with_samples(snakemake.input.reads_used_for_assembly):