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add sample_ontology_intermediate_color
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@quirinmanz
quirinmanz committed Oct 8, 2024
1 parent a93e504 commit 9b195bf
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225 changes: 225 additions & 0 deletions openrefine/v1.3/IHEC_EpiATLAS_IA_colors_Apl01_2024.json
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[
{
"experiment": [
{
"H3K4me1": "236,232,56",
"H3K4me3": "238,30,37",
"H3K36me3": "13,127,66",
"H3K27me3": "184,185,189",
"H3K9me3": "144,206,219",
"H3K27ac": "225,148,37",
"Input": "30,30,30",
"WGBS": "81,89,168",
"RNA-seq": "30,176,75"
}
]
},
{
"ChromHMM_color_model_18_core_K27ac": [
{
"1_TssA": "255,0,0",
"2_TssFlnk": "255,69,0",
"3_TssFlnkU": "255,69,0",
"4_TssFlnkD": "255,69,0",
"5_Tx": "0,128,0",
"6_TxWk": "0,100,0",
"7_EnhG1": "194,225,5",
"8_EnhG2": "194,225,5",
"9_EnhA1": "255,195,77",
"10_EnhA2": "255,195,77",
"11_EnhWk": "255,255,0",
"12_ZNF/Rpts": "102,205,170",
"13_Het": "138,145,208",
"14_TssBiv": "205,92,92",
"15_EnhBiv": "189,183,107",
"16_ReprPC": "128,128,128",
"17_ReprPCWk": "192,192,192",
"18_Quies": "255,255,255"
}
]
},
{
"Methylation_segmentation": [
{
"HMR": "202,0,32",
"PMD": "244,165,130",
"LMR": "146,197,222",
"UMR": "5,113,176"
}
]
},
{
"harmonized_biomaterial_type": [
{
"cell line": "166,206,227",
"primary cell": "31,120,180",
"primary cell culture": "178,223,138",
"primary tissue": "51,160,44"
}
]
},
{
"harmonized_sample_disease_high": [
{
"Cancer": "0,0,0",
"Disease": "255,69,0",
"Healthy/None": "224,224,224"
}
]
},
{
"harmonized_sample_ontology_intermediate": [
{
"B cell derived cell line": "227,68,62",
"brain": "185,126,30",
"cancer cell line": "177,126,90",
"capillary blood": "228,102,84",
"colon": "66,121,77",
"connective tissue cell": "136,43,0",
"dendritic cell": "166,0,118",
"digestive system": "43,79,36",
"embryonic cell (metazoa)": "114,94,149",
"endoderm-derived structure": "47,71,132",
"endo-epithelial cell": "58,36,22",
"eosinophil": "198,57,171",
"epithelial cell derived cell line": "74,44,24",
"epithelial cell of endometrial gland": "89,51,26",
"epithelium": "105,59,28",
"erythroid lineage cell": "229,97,214",
"extraembryonic cell": "76,110,194",
"fibroblast derived cell line": "124,42,16",
"germ line cell": "100,183,237",
"hematopoietic cell": "224,67,44",
"hepatocyte": "96,195,170",
"induced pluripotent stem cell": "79,64,140",
"keratinocyte": "109,67,30",
"kidney": "37,159,57",
"kidney epithelial cell": "136,74,32",
"KMS-11": "230,69,81",
"liver": "83,156,114",
"lung": "22,204,125",
"lymph node": "61,119,17",
"lymphocyte of B lineage": "234,71,100",
"lymphoma or leukaemia cell line": "180,126,60",
"macrophage": "191,134,235",
"mammary gland epithelial cell": "121,67,30",
"melanocyte": "113,41,32",
"mesoderm-derived structure": "74,38,157",
"meso-epithelial cell": "152,82,34",
"mole": "194,169,114",
"monocyte": "162,90,219",
"mononuclear cell": "139,49,168",
"mucosa": "84,79,29",
"muscle cell": "48,127,119",
"muscle organ": "52,151,113",
"muscle precursor cell": "44,155,85",
"myeloid cell": "143,81,121",
"natural killer cell": "195,49,107",
"nervous system": "235,156,62",
"neural cell": "217,175,41",
"neural progenitor cell": "226,165,51",
"neutrophil": "224,156,210",
"ovary": "181,104,96",
"pancreas": "104,199,59",
"peripheral blood mononuclear cell": "150,69,193",
"placenta": "91,80,208",
"secretory cell": "36,106,96",
"stem cell": "74,57,107",
"stem cell derived cell line": "85,72,174",
"suprapubic skin": "228,161,129",
"T cell": "182,26,57",
"testis": "169,169,169",
"trophoblast": "99,145,226",
"uterus": "135,105,48",
"venous blood": "226,84,64"
}
]
},
{
"harmonized_donor_sex": [
{
"female": "255,182,193",
"male": "191,239,255",
"mixed": "238,174,238",
"unknown": "255,255,255"
}
]
},
{
"fig1_life_stage": [
{
"adult": "223,194,125",
"pediatric": "0,60,48",
"prenatal": "140,81,10",
"unknown": "255,255,255"
}
]
},
{
"fig1_project": [
{
"BLUEPRINT": "104,139,205",
"CEEHRC": "204,86,106",
"CREST": "103,177,74",
"DEEP": "132,98,204",
"ENCODE": "200,167,71",
"EpiHK": "202,102,56",
"GIS": "75,175,144",
"KNIH": "195,97,170",
"REMC": "120,122,54"
}
]
},
{
"fig1_ontology_intermediate_merged": [
{
"B lymphocyte": "234,71,100",
"brain": "185,126,30",
"cancer cell line": "177,126,90",
"colon": "66,121,77",
"connective tissue cell": "136,43,0",
"dendritic cell": "166,0,118",
"digestive system": "43,79,36",
"embryonic cell (metazoa)": "114,94,149",
"endoderm-derived structure": "47,71,132",
"eosinophil": "198,57,171",
"epithelial": "168,90,36",
"erythroid lineage cell": "229,97,214",
"extraembryonic cell": "76,110,194",
"germ line cell": "100,183,237",
"hematopoietic cell": "224,67,44",
"hepatocyte": "96,195,170",
"keratinocyte": "109,67,30",
"kidney": "37,159,57",
"liver": "83,156,114",
"lung": "22,204,125",
"lymph node": "61,119,17",
"macrophage": "191,134,235",
"melanocyte": "113,41,32",
"mesoderm-derived structure": "74,38,157",
"mole": "194,169,114",
"monocyte": "162,90,219",
"mononuclear cell": "139,49,168",
"mucosa": "84,79,29",
"muscle": "60,148,142",
"myeloid cell": "143,81,121",
"natural killer cell": "195,49,107",
"nervous system": "235,156,62",
"neural": "217,175,41",
"neutrophil": "224,156,210",
"ovary": "181,104,96",
"pancreas": "104,199,59",
"peripheral blood": "231,120,104",
"placenta": "91,80,208",
"secretory cell": "36,106,96",
"stem cell": "74,57,107",
"suprapubic skin": "228,161,129",
"testis": "169,169,169",
"T lymphocyte": "182,26,57",
"trophoblast": "99,145,226",
"uterus": "135,105,48"
}
]
}
]

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