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Add workflow to run prediction on lidar-prod optimization dataset
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# Workflow name | ||
name: "Prediction on lidar-prod optimization dataset" | ||
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on: | ||
# Run workflow on user request | ||
workflow_dispatch: | ||
inputs: | ||
user: | ||
description: | | ||
Username : | ||
Utilisé pour générer un chemin standard pour les sorties dans le | ||
dossier IA du store (projet-LHD/IA/MYRIA3D-SHARED-WORKSPACE/$USER/$SAMPLING_NAME/) | ||
required: true | ||
sampling_name: | ||
description: | | ||
Sampling name : | ||
Nom du dataset sur lequel le modèle a été entraîné. | ||
Utilisé pour générer un chemin standard pour les sorties dans le | ||
dossier IA du store (projet-LHD/IA/MYRIA3D-SHARED-WORKSPACE/$USER/$SAMPLING_NAME/) | ||
Eg. YYYYMMDD_MonBeauDataset | ||
required: true | ||
checkpoint_name: | ||
description: | | ||
Nom du fichier checkpoint à utiliser pour les prédictions | ||
(doit exister dans projet-LHD/IA/MYRIA3D-SHARED-WORKSPACE/$USER/$SAMPLING_NAME/) | ||
Exemple : YYYMMDD_MonBeauSampling_epochXXX_Myria3Dx.y.z.ckpt | ||
required: true | ||
predict_config_name: | ||
description: | | ||
Nom du fichier de config de myria3d (fichier .yaml) à utiliser pour la prédiction | ||
(doit exister dans projet-LHD/IA/MYRIA3D-SHARED-WORKSPACE/$USER/$SAMPLING_NAME/) | ||
Exemple: YYYMMDD_MonBeauSampling_epochXXX_Myria3Dx.y.z_predict_config_Vx.y.z.yaml | ||
required: true | ||
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jobs: | ||
predict-validation-dataset: | ||
runs-on: self-hosted | ||
env: | ||
WORKDIR: /var/data/LIDAR-PROD-OPTIMIZATION/ | ||
DATA: /var/data/LIDAR-PROD-OPTIMIZATION/20221018_lidar-prod-optimization-on-151-proto/Comparison/ | ||
LOGS_DIR: /var/data/MYRIA3D-SHARED-WORKSPACE/${{ github.event.inputs.user }}/${{ github.event.inputs.sampling_name }}/ | ||
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steps: | ||
- name: Log configuration | ||
run: | | ||
echo "Run prediction on lidar-prod optimzation datasets (val and test)" | ||
echo "Sampling name: ${{ github.event.inputs.sampling_name }}" | ||
echo "User name: ${{ github.event.inputs.user }}" | ||
echo "checkpoint name ${{ github.event.inputs.checkpoint_name }}" | ||
echo "predict_config_name name ${{ github.event.inputs.predict_config_name }}" | ||
echo "workdir: ${{env.WORKDIR}}" | ||
echo "data: ${{env.DATA}}" | ||
echo "logs dir: ${{env.LOGS_DIR}}" | ||
- name: Checkout branch | ||
uses: actions/checkout@v4 | ||
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# See https://github.com/marketplace/actions/setup-micromamba | ||
- name: setup-micromamba | ||
uses: mamba-org/[email protected] | ||
with: | ||
environment-file: environment.yml | ||
environment-name: myria3d # activate the environment | ||
cache-environment-key: environment-myria3d-predict-validation-dataset # create cache for this pipeline only | ||
# Do not restore downloads as they are already stored by micromamba | ||
# cache-downloads-key: downloads-myria3d-predict-validation-dataset | ||
generate-run-shell: true | ||
download-micromamba: false | ||
micromamba-binary-path: /var/data/.local/bin/micromamba | ||
micromamba-root-path: /var/data/micromamba | ||
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- name: Run prediction on validation dataset | ||
shell: micromamba-shell {0} | ||
run: > | ||
python run.py | ||
--config-path ${{env.LOGS_DIR}} | ||
--config-name ${{ github.event.inputs.predict_config_name }} | ||
task.task_name=predict | ||
predict.src_las=${{env.DATA}}/val/*.laz | ||
predict.ckpt_path=${{env.LOGS_DIR}}${{ github.event.inputs.checkpoint_name }} | ||
predict.output_dir=${{env.WORKDIR}}/${{ github.event.inputs.sampling_name }}/preds-valset/ | ||
predict.interpolator.probas_to_save=[building] | ||
predict.gpus=0 | ||
datamodule.batch_size=10 | ||
- name: Run prediction on test dataset | ||
shell: micromamba-shell {0} | ||
run: > | ||
python run.py | ||
--config-path ${{env.LOGS_DIR}} | ||
--config-name ${{ github.event.inputs.predict_config_name }} | ||
task.task_name=predict | ||
predict.src_las=${{env.DATA}}/test/*.laz | ||
predict.ckpt_path=${{env.LOGS_DIR}}${{ github.event.inputs.checkpoint_name }} | ||
predict.output_dir=${{env.WORKDIR}}/${{ github.event.inputs.sampling_name }}/preds-testset/ | ||
predict.interpolator.probas_to_save=[building] | ||
predict.gpus=0 | ||
datamodule.batch_size=10 |
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