Merge branch 'develop' into massindexer

I-TECH-UW · Aug 13, 2024 · a26f937 · a26f937
2 parents f5f1658 + 8053b98
commit a26f937
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Showing 15 changed files with 516 additions and 1,027 deletions.
diff --git a/frontend/cypress/pages/HomePage.js b/frontend/cypress/pages/HomePage.js
@@ -19,8 +19,8 @@ class HomePage {
 
   goToOrderPage() {
     this.openNavigationMenu();
-    cy.get("#menu_sample").click();
-    cy.get("#menu_sample_add").click();
+    cy.get("#menu_sample_dropdown").click();
+    cy.get("#menu_sample_add_nav").click();
     return new OrderEntityPage();
   }
 
@@ -32,69 +32,69 @@ class HomePage {
 
   goToBatchOrderEntry() {
     this.openNavigationMenu();
-    cy.get("#menu_sample").click();
-    cy.get("#menu_sample_batch_entry").click();
+    cy.get("#menu_sample_dropdown").click();
+    cy.get("#menu_sample_batch_entry_nav").click();
     return new BatchOrderEntry();
   }
 
   goToPatientEntry() {
     this.openNavigationMenu();
-    cy.get("#menu_patient").click();
-    cy.get("#menu_patient_add_or_edit").click();
+    cy.get("#menu_patient_dropdown").click();
+    cy.get("#menu_patient_add_or_edit_nav").click();
     return new PatientEntryPage();
   }
 
   goToModifyOrderPage() {
     this.openNavigationMenu();
-    cy.get("#menu_sample").click();
-    cy.get("#menu_sample_edit").click();
+    cy.get("#menu_sample_dropdown").click();
+    cy.get("#menu_sample_edit_nav").click();
     return new ModifyOrderPage();
   }
   goToWorkPlanPlanByTest() {
     this.openNavigationMenu();
-    cy.get("#menu_workplan").click();
-    cy.get("#menu_workplan_test").click();
+    cy.get("#menu_workplan_dropdown").click();
+    cy.get("#menu_workplan_test_nav").click();
     return new WorkPlan();
   }
 
   goToWorkPlanPlanByPanel() {
     this.openNavigationMenu();
-    cy.get("#menu_workplan").click();
-    cy.get("#menu_workplan_panel").click();
+    cy.get("#menu_workplan_dropdown").click();
+    cy.get("#menu_workplan_panel_nav").click();
     return new WorkPlan();
   }
 
   goToWorkPlanPlanByUnit() {
     this.openNavigationMenu();
-    cy.get("#menu_workplan").click();
-    cy.get("#menu_workplan_bench").click();
+    cy.get("#menu_workplan_dropdown").click();
+    cy.get("#menu_workplan_bench_nav").click();
     return new WorkPlan();
   }
 
   goToWorkPlanPlanByPriority() {
     this.openNavigationMenu();
-    cy.get("#menu_workplan").click();
-    cy.get("#menu_workplan_priority").click();
+    cy.get("#menu_workplan_dropdown").click();
+    cy.get("#menu_workplan_priority_nav").click();
     return new WorkPlan();
   }
 
   goToReportNCE() {
     this.openNavigationMenu();
-    cy.get("#menu_nonconformity").click();
-    cy.get("#menu_non_conforming_report").click();
+    cy.get("#menu_nonconformity_dropdown").click();
+    cy.get("#menu_non_conforming_report_nav").click();
     return new NonConform();
   }
 
   goToViewNCE() {
     this.openNavigationMenu();
-    cy.get("#menu_nonconformity").click();
-    cy.get("#menu_non_conforming_view").click();
+    cy.get("#menu_nonconformity_dropdown").click();
+    cy.get("#menu_non_conforming_view_nav").click();
     return new NonConform();
   }
   goToCorrectiveActions() {
     this.openNavigationMenu();
-    cy.get("#menu_nonconformity").click();
-    cy.get("#menu_non_conforming_corrective_actions").click();
+    cy.get("#menu_nonconformity_dropdown").click();
+    cy.get("#menu_non_conforming_corrective_actions_nav").click();
     return new NonConform();
   }
 }

diff --git a/frontend/src/components/Style.css b/frontend/src/components/Style.css
@@ -498,13 +498,18 @@ button {
   padding-left: 1rem !important;
 }
 
-.cds--side-nav__link:hover {
+.top-level-menu-item > a {
+  pointer-events: auto !important;
+  text-decoration: none !important;
+}
+
+.top-level-menu-item > a:hover {
   background-color: var(--cds-background-hover, #072655);
 }
 
-/* .cds--side-nav__link {
+#mainHeader .cds--side-nav__link {
   pointer-events: none
-} */
+}
 
 @media screen and (max-width: 792px) {
   .banner h5 {

diff --git a/frontend/src/components/layout/Header.js b/frontend/src/components/layout/Header.js
@@ -184,14 +184,15 @@ function OEHeader(props) {
     if (menuItem.menu.isActive) {
       if (level === 0 && menuItem.childMenus.length > 0) {
         return (
-          <React.Fragment key={path}>
+          <span id={menuItem.menu.elementId} key={path}>
             <span
-              id={menuItem.menu.elementId}
+              id={menuItem.menu.elementId + "_dropdown"}
               onClick={(e) => {
                 setMenuItemExpanded(e, menuItem, path);
               }}
             >
               <SideNavMenu
+                className="top-level-menu-item"
                 aria-label={intl.formatMessage({
                   id: menuItem.menu.displayKey,
                 })}
@@ -200,38 +201,52 @@ function OEHeader(props) {
                 })}
                 key={"menu_" + index + "_" + level}
                 defaultExpanded={menuItem.expanded}
-                onClick={(e) => {
-                  setMenuItemExpanded(e, menuItem, path);
-                }}
+                // onClick={(e) => { // not supported yet, but if it becomes so we can simplify the functionality here by having this here and not have a span around it
+                //   setMenuItemExpanded(e, menuItem, path);
+                // }}
               >
-                {menuItem.childMenus.map((childMenuItem, index) => {
-                  return generateMenuItems(
-                    childMenuItem,
-                    index,
-                    level + 1,
-                    path + ".childMenus[" + index + "]",
-                  );
-                })}
+                <span
+                  onClick={(e) => {
+                    e.preventDefault();
+                    e.stopPropagation();
+                  }}
+                >
+                  {menuItem.childMenus.map((childMenuItem, index) => {
+                    return generateMenuItems(
+                      childMenuItem,
+                      index,
+                      level + 1,
+                      path + ".childMenus[" + index + "]",
+                    );
+                  })}
+                </span>
               </SideNavMenu>
             </span>
-          </React.Fragment>
+          </span>
         );
       } else if (level === 0) {
         return (
-          <React.Fragment key={path}>
+          <span key={path} id={menuItem.menu.elementId}>
             <SideNavMenuItem
-              id={menuItem.menu.elementId}
+              id={menuItem.menu.elementId + "_nav"}
               href={menuItem.menu.actionURL}
               target={menuItem.menu.openInNewWindow ? "_blank" : ""}
+              className="top-level-menu-item"
             >
               {renderSideNavMenuItemLabel(menuItem, level)}
             </SideNavMenuItem>
-          </React.Fragment>
+          </span>
         );
       } else {
         return (
-          <React.Fragment key={path}>
-            <SideNavMenuItem className="reduced-padding-nav-menu-item">
+          <span id={menuItem.menu.elementId} key={path}>
+            <SideNavMenuItem
+              className="reduced-padding-nav-menu-item"
+              href={menuItem.menu.actionURL}
+              target={menuItem.menu.openInNewWindow ? "_blank" : ""}
+              style={{ width: "100%" }}
+              rel="noreferrer"
+            >
               <span style={{ display: "flex", width: "100%" }}>
                 {!menuItem.menu.actionURL &&
                   !hasActiveChildMenu(menuItem) &&
@@ -261,7 +276,7 @@ function OEHeader(props) {
                 </span>
               );
             })}
-          </React.Fragment>
+          </span>
         );
       }
     } else {
@@ -284,27 +299,20 @@ function OEHeader(props) {
   const renderSingleNavButton = (menuItem, index, level, path) => {
     const marginValue = (level - 1) * 0.5 + "rem";
     return (
-      <a
-        id={menuItem.menu.elementId}
-        href={menuItem.menu.actionURL}
-        target={menuItem.menu.openInNewWindow ? "_blank" : ""}
-        style={{ width: "100%" }}
-        rel="noreferrer"
+      <button
+        className={"custom-sidenav-button"}
+        style={{ width: "100%", marginLeft: marginValue }}
+        id={menuItem.menu.elementId + "_nav"}
+        onClick={() => {
+          if (menuItem.menu.openInNewWindow) {
+            window.open(menuItem.menu.actionURL);
+          } else {
+            window.location.href = menuItem.menu.actionURL;
+          }
+        }}
       >
-        <button
-          className={"custom-sidenav-button"}
-          style={{ marginLeft: marginValue }}
-          onClick={() => {
-            if (menuItem.menu.openInNewWindow) {
-              window.open(menuItem.menu.actionURL);
-            } else {
-              window.location.href = menuItem.menu.actionURL;
-            }
-          }}
-        >
-          {renderSideNavMenuItemLabel(menuItem, level)}
-        </button>
-      </a>
+        {renderSideNavMenuItemLabel(menuItem, level)}
+      </button>
     );
   };
 
@@ -329,31 +337,24 @@ function OEHeader(props) {
     const marginValue = (level - 1) * 0.5 + "rem";
     return (
       <>
-        <a
-          id={menuItem.menu.elementId}
-          href={menuItem.menu.actionURL}
-          target={menuItem.menu.openInNewWindow ? "_blank" : ""}
-          style={{ width: "100%" }}
-          rel="noreferrer"
-        >
-          <button
-            className={
-              menuItem.menu.actionURL
-                ? "custom-sidenav-button"
-                : "custom-sidenav-button-unclickable"
+        <button
+          id={menuItem.menu.elementId + "_nav"}
+          className={
+            menuItem.menu.actionURL
+              ? "custom-sidenav-button"
+              : "custom-sidenav-button-unclickable"
+          }
+          style={{ marginLeft: marginValue }}
+          onClick={() => {
+            if (menuItem.menu.openInNewWindow) {
+              window.open(menuItem.menu.actionURL);
+            } else {
+              window.location.href = menuItem.menu.actionURL;
             }
-            style={{ marginLeft: marginValue }}
-            onClick={() => {
-              if (menuItem.menu.openInNewWindow) {
-                window.open(menuItem.menu.actionURL);
-              } else {
-                window.location.href = menuItem.menu.actionURL;
-              }
-            }}
-          >
-            {renderSideNavMenuItemLabel(menuItem, level)}
-          </button>
-        </a>
+          }}
+        >
+          {renderSideNavMenuItemLabel(menuItem, level)}
+        </button>
         {menuItem.childMenus.length > 0 && (
           <button
             id={menuItem.menu.displayKey + "_dropdown"}

diff --git a/pom.xml b/pom.xml
@@ -16,7 +16,7 @@
     <minor.version>8</minor.version>
     <state.version>1</state.version>
     <!-- 0 = alpha, 1 = beta, 2 = rc, 3 = deployable -->
-    <fix.version>38</fix.version>
+    <fix.version>39</fix.version>
     <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
     <liquibase.propertyFile>${project.basedir}/liquibase/liquibase.properties</liquibase.propertyFile>
     <castor.version>1.4.1</castor.version>
@@ -84,10 +84,10 @@
       <version>2.12.0</version>
     </dependency>
     <dependency>
-            <groupId>com.fasterxml.jackson.datatype</groupId>
-            <artifactId>jackson-datatype-jsr310</artifactId>
-            <version>2.12.3</version>
-        </dependency>
+      <groupId>com.fasterxml.jackson.datatype</groupId>
+      <artifactId>jackson-datatype-jsr310</artifactId>
+      <version>2.12.3</version>
+    </dependency>
     <!-- APACHE ASSORTED DEPENDENCIES -->
     <dependency>
       <groupId>org.apache.httpcomponents</groupId>

diff --git a/src/main/java/org/openelisglobal/analysis/daoimpl/AnalysisDAOImpl.java b/src/main/java/org/openelisglobal/analysis/daoimpl/AnalysisDAOImpl.java
@@ -1220,7 +1220,6 @@ public List<Analysis> getAllAnalysisByTestsAndStatusAndCompletedDateRange(List<I
             String sql = "from Analysis a where a.test.id IN (:testList) and a.statusId IN (:analysisStatusList)"
                     + " and a.sampleItem.sample.statusId IN (:sampleStatusList) and a.completedDate"
                     + " BETWEEN :lowDate AND :highDate order by a.sampleItem.sample.accessionNumber";
-
             for (Integer testId : testIdList) {
                 testList.add(testId);
             }

diff --git a/.../org/openelisglobal/reports/action/implementation/WHONETCSVRoutineSampleExportReport.java b/.../org/openelisglobal/reports/action/implementation/WHONETCSVRoutineSampleExportReport.java
@@ -67,7 +67,6 @@ public byte[] runReport() throws UnsupportedEncodingException, IOException, Ille
         buffer.write(WHONETcsvRoutineColumnBuilder.getColumnNamesLine().getBytes("windows-1252"));
 
         writeResultsToBuffer(buffer);
-        WHONETcsvRoutineColumnBuilder.closeResultSet();
 
         return buffer.toByteArray();
     }