increased the HDD to 3500 GB, from 500 GB originally, to speed-up the SplitBamByCellBarcode step #358
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… new sctools to write the intermediate BAM files of SplitCellByBarcode in SAM format. The goal is to speed-up the step but at the expense of larger sized intermediate files in the step
nikellepetrillo
approved these changes
Aug 3, 2020
jessicaway
reviewed
Aug 4, 2020
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| Int machine_mem_mb = 15258 | ||
| Int cpu = 16 | ||
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| # we can calculate disk size for arrays of input files in WDL 1.0 | ||
| Int disk = 500 | ||
| Int disk = 3500 |
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should we calculate this based on input size rather than just always getting a ton of disk?
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Purpose
Speed-up the SplitCellByCellBarcode step of Optimus by modifying the sctools to write the intermediate BAM files of SplitCellByBarcode in SAM format. The goal is to speed-up the step but at the expense of larger sized intermediate files in the step
Changes
a) Changed the HDD from 500GB to 3500GB
b) Changed the docker image to a higher version of sctools