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Merge Latest Release into main (#1702)
* Bump YamlDotNet from 13.3.1 to 13.4.0 Bumps [YamlDotNet](https://github.com/aaubry/YamlDotNet) from 13.3.1 to 13.4.0. - [Release notes](https://github.com/aaubry/YamlDotNet/releases) - [Commits](aaubry/YamlDotNet@v13.3.1...v13.4.0) --- updated-dependencies: - dependency-name: YamlDotNet dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> * Bump shogo82148/actions-setup-perl from 1.23.1 to 1.24.1 Bumps [shogo82148/actions-setup-perl](https://github.com/shogo82148/actions-setup-perl) from 1.23.1 to 1.24.1. - [Release notes](https://github.com/shogo82148/actions-setup-perl/releases) - [Commits](shogo82148/actions-setup-perl@v1.23.1...v1.24.1) --- updated-dependencies: - dependency-name: shogo82148/actions-setup-perl dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> * fix checkbox issue * improve confirmation text (#1639) * improve confirmation text * Loop tidyup, use var where possible --------- Co-authored-by: jas88 <[email protected]> * correct typo in create logging sql (#1640) * Feature/ci codescan (#1641) * Move SecurityCodescan.VS2019 to run on Github CI alone, integrate results with CodeQL * Remove SecurityCodescan from Packages.md, no longer used via Nuget --------- Co-authored-by: James A Sutherland <[email protected]> * hide source control when not available * Remove old Plugin object bits, tidy up (#1636) * Remove old Plugin object bits, tidy up * Purge remaining bits of AllExpiredPluginsNode * Fix plugin display name in tree * Update CreateNewDataExtractionProjectUI.cs Casting fix * Feature/rdmp42 delete plugins (#1642) * add ui plugin delete functionality * Warning and inheritance redundancy cleanups * Narrow scope of catch clause per CodeQL warning * Tidy Plugin name retrieval --------- Co-authored-by: James A Sutherland <> Co-authored-by: James Friel <[email protected]> * Bump MongoDB.Driver from 2.21.0 to 2.22.0 Bumps [MongoDB.Driver](https://github.com/mongodb/mongo-csharp-driver) from 2.21.0 to 2.22.0. - [Release notes](https://github.com/mongodb/mongo-csharp-driver/releases) - [Commits](mongodb/mongo-csharp-driver@v2.21.0...v2.22.0) --- updated-dependencies: - dependency-name: MongoDB.Driver dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> * Bump YamlDotNet from 13.4.0 to 13.5.2 (#1644) Bumps [YamlDotNet](https://github.com/aaubry/YamlDotNet) from 13.4.0 to 13.5.2. - [Release notes](https://github.com/aaubry/YamlDotNet/releases) - [Commits](aaubry/YamlDotNet@v13.4.0...v13.5.2) --- updated-dependencies: - dependency-name: YamlDotNet dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump YamlDotNet from 13.5.2 to 13.7.0 (#1647) * Bump SSH.NET from 2020.0.2 to 2023.0.0 (#1646) * Bump YamlDotNet from 13.7.0 to 13.7.1 Bumps [YamlDotNet](https://github.com/aaubry/YamlDotNet) from 13.7.0 to 13.7.1. - [Release notes](https://github.com/aaubry/YamlDotNet/releases) - [Commits](aaubry/YamlDotNet@v13.7.0...v13.7.1) --- updated-dependencies: - dependency-name: YamlDotNet dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * Bump NLog from 5.2.4 to 5.2.5 Bumps [NLog](https://github.com/NLog/NLog) from 5.2.4 to 5.2.5. - [Release notes](https://github.com/NLog/NLog/releases) - [Changelog](https://github.com/NLog/NLog/blob/dev/CHANGELOG.md) - [Commits](NLog/NLog@v5.2.4...v5.2.5) --- updated-dependencies: - dependency-name: NLog dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * New FTP/FTPS support, improve SFTP (#1649) Co-authored-by: James Friel <[email protected]> * Cut Windows exe file counts (#1650) * Cut Windows exe file counts * Remove manual deletion of files dotnet publish used to create * Fix up docs links * More doc link fixups * Fix FAnsiSql Implementations README links * Make GUI and CLI Windows exes single-file, update MSI accordingly * Build source zip early on for inclusion later --------- Co-authored-by: James Friel <[email protected]> Co-authored-by: James A Sutherland <> * Bump actions/setup-node from 3.8.1 to 4.0.0 Bumps [actions/setup-node](https://github.com/actions/setup-node) from 3.8.1 to 4.0.0. - [Release notes](https://github.com/actions/setup-node/releases) - [Commits](actions/setup-node@v3.8.1...v4.0.0) --- updated-dependencies: - dependency-name: actions/setup-node dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> * Task/rdmp-32 Fix Progress Log writing using excessive resources (#1657) * add load * readd sorting * revert sorting * tidy up code * Task/rdmp 32 Name DataTable Chunks (#1658) * add chunk naming * bump to 8.1.1-r1 * Add heading for WIP 8.1.1 release --------- Co-authored-by: James A Sutherland <[email protected]> * RDMP-15 Use .bak files as Data Loads (#1656) * basic ui triggers * working dl --------- Co-authored-by: James A Sutherland <[email protected]> * Bump FluentFTP from 48.0.1 to 48.0.3 Bumps [FluentFTP](https://github.com/robinrodricks/FluentFTP) from 48.0.1 to 48.0.3. - [Release notes](https://github.com/robinrodricks/FluentFTP/releases) - [Changelog](https://github.com/robinrodricks/FluentFTP/blob/master/RELEASES.md) - [Commits](https://github.com/robinrodricks/FluentFTP/commits) --- updated-dependencies: - dependency-name: FluentFTP dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * Feature/cleanup (#1659) * Use var * Whitespace fixes * Remove stray parentheses * Update SingletonNode.cs Fix confused syntax, use Equ for simplicity * Typos Fix typos, also make some verbatim strings raw strings for better formatting. * Spelling/grammar, wrongly marked partial classes * Update SingletonNode.cs Fix up equality test to be strict about types * Fix typos and tidy tooltip cache logic * Bump shogo82148/actions-setup-perl from 1.24.1 to 1.24.2 --- updated-dependencies: - dependency-name: shogo82148/actions-setup-perl dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * Bump SixLabors.ImageSharp.Drawing from 2.0.0 to 2.0.1 Bumps [SixLabors.ImageSharp.Drawing](https://github.com/SixLabors/ImageSharp.Drawing) from 2.0.0 to 2.0.1. - [Release notes](https://github.com/SixLabors/ImageSharp.Drawing/releases) - [Commits](SixLabors/ImageSharp.Drawing@v2.0.0...v2.0.1) --- updated-dependencies: - dependency-name: SixLabors.ImageSharp.Drawing dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * Bump Terminal.Gui from 1.14.0 to 1.14.1 (#1662) Bumps [Terminal.Gui](https://github.com/gui-cs/Terminal.Gui) from 1.14.0 to 1.14.1. - [Release notes](https://github.com/gui-cs/Terminal.Gui/releases) - [Commits](gui-cs/Terminal.Gui@v1.14.0...v1.14.1) --- updated-dependencies: - dependency-name: Terminal.Gui dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Restore buggy Equals behaviour on SingletonNode since some UI code relied on the bug * Bump NUnit from 3.13.3 to 3.14.0 Bumps [NUnit](https://github.com/nunit/nunit) from 3.13.3 to 3.14.0. - [Release notes](https://github.com/nunit/nunit/releases) - [Changelog](https://github.com/nunit/nunit/blob/master/CHANGES.md) - [Commits](nunit/nunit@v3.13.3...v3.14.0) --- updated-dependencies: - dependency-name: NUnit dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> * Fix Extraction Refresh Issue (#1671) * fix extraction refresh issue * reload, but not hot * Bump Microsoft.NET.Test.Sdk from 17.7.2 to 17.8.0 Bumps [Microsoft.NET.Test.Sdk](https://github.com/microsoft/vstest) from 17.7.2 to 17.8.0. - [Release notes](https://github.com/microsoft/vstest/releases) - [Changelog](https://github.com/microsoft/vstest/blob/main/docs/releases.md) - [Commits](microsoft/vstest@v17.7.2...v17.8.0) --- updated-dependencies: - dependency-name: Microsoft.NET.Test.Sdk dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> * Feature/rdmp 73 cohort holdouts (#1653) * add top to cohort * working holdout flow * interim * basic ui flow * now filtering * working flow * working auto-holdout * fix test * add query * improved holdout * tidy up code * add description * revert test db * add holdout description * add todo * fixups from codeql * Minor syntax fix * Fix possible null deref * fix todo url * Tidy, typo fix * Remove disused field --------- Co-authored-by: James A Sutherland <[email protected]> Co-authored-by: James A Sutherland <> * RDMP-108 Unified UI Alerting from Processing Chunks (#1663) * batched ui * tidy up * attempt to fix codeql * fix linting * add if check * fix test * add pragma * fix up test * update from codeql * Update DataFlowPipelineEngine.cs Tidy thread logic, fix double-disposal of objects * Put chunk disposal in a finally block to avoid leaks --------- Co-authored-by: James A Sutherland <[email protected]> Co-authored-by: James A Sutherland <> * Bump NLog from 5.2.5 to 5.2.6 (#1679) Bumps [NLog](https://github.com/NLog/NLog) from 5.2.5 to 5.2.6. - [Release notes](https://github.com/NLog/NLog/releases) - [Changelog](https://github.com/NLog/NLog/blob/dev/CHANGELOG.md) - [Commits](NLog/NLog@v5.2.5...v5.2.6) --- updated-dependencies: - dependency-name: NLog dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump Microsoft.SourceLink.GitHub from 1.1.1 to 8.0.0 Bumps [Microsoft.SourceLink.GitHub](https://github.com/dotnet/sourcelink) from 1.1.1 to 8.0.0. - [Release notes](https://github.com/dotnet/sourcelink/releases) - [Commits](https://github.com/dotnet/sourcelink/commits) --- updated-dependencies: - dependency-name: Microsoft.SourceLink.GitHub dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> * Bump Microsoft.XmlSerializer.Generator from 7.0.0 to 8.0.0 Bumps [Microsoft.XmlSerializer.Generator](https://github.com/dotnet/runtime) from 7.0.0 to 8.0.0. - [Release notes](https://github.com/dotnet/runtime/releases) - [Commits](dotnet/runtime@v7.0.0...v8.0.0) --- updated-dependencies: - dependency-name: Microsoft.XmlSerializer.Generator dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> * fix bump * Fix coverage reporting (#1683) * Rearrange lcov file handling * Update coveralls action * Point Github-Actions Dependabot updates at develop branch, add JFriel as reviewer * Bump Spectre.Console from 0.47.0 to 0.48.0 Bumps [Spectre.Console](https://github.com/spectreconsole/spectre.console) from 0.47.0 to 0.48.0. - [Release notes](https://github.com/spectreconsole/spectre.console/releases) - [Commits](spectreconsole/spectre.console@0.47.0...0.48.0) --- updated-dependencies: - dependency-name: Spectre.Console dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> * Bump WeCantSpell.Hunspell from 4.0.0 to 4.1.0 Bumps [WeCantSpell.Hunspell](https://github.com/aarondandy/WeCantSpell.Hunspell) from 4.0.0 to 4.1.0. - [Release notes](https://github.com/aarondandy/WeCantSpell.Hunspell/releases) - [Changelog](https://github.com/aarondandy/WeCantSpell.Hunspell/blob/main/changelog.md) - [Commits](aarondandy/WeCantSpell.Hunspell@4.0.0...4.1.0) --- updated-dependencies: - dependency-name: WeCantSpell.Hunspell dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> * Task/update plugin bundling (#1678) * attempt to wget dicom plugin * improved looping for plugins * update script * add to bundle * update build * add charts * update changelog * remove bad files * improve build * add verbose curl * temp diable tests * attempt to simplify build * readd tests --------- Co-authored-by: James A Sutherland <[email protected]> * Bump shogo82148/actions-setup-perl from 1.24.2 to 1.24.3 Bumps [shogo82148/actions-setup-perl](https://github.com/shogo82148/actions-setup-perl) from 1.24.2 to 1.24.3. - [Release notes](https://github.com/shogo82148/actions-setup-perl/releases) - [Commits](shogo82148/actions-setup-perl@v1.24.2...v1.24.3) --- updated-dependencies: - dependency-name: shogo82148/actions-setup-perl dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * bump version * attemt sign * remove coveralls * update sign * add ls * correct file name * more ls * correct linux file extention * comment out linux * fix typo * update signing * update changelog * add ls * remove extra sign * add test back in * Bump NLog from 5.2.6 to 5.2.7 Bumps [NLog](https://github.com/NLog/NLog) from 5.2.6 to 5.2.7. - [Release notes](https://github.com/NLog/NLog/releases) - [Changelog](https://github.com/NLog/NLog/blob/dev/CHANGELOG.md) - [Commits](https://github.com/NLog/NLog/commits) --- updated-dependencies: - dependency-name: NLog dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * Bump System.Security.Permissions from 7.0.0 to 8.0.0 (#1676) * Bump System.Threading.AccessControl from 7.0.1 to 8.0.0 (#1675) * Bump NUnit from 3.14.0 to 4.0.0 (#1686) * Bump actions/setup-dotnet from 3.2.0 to 4.0.0 (#1694) * Feature/rdmp-113 datasets (#1682) * Dataset PR * Bump shogo82148/actions-setup-perl from 1.24.3 to 1.25.0 (#1692) Bump shogo82148/actions-setup-perl from 1.24.3 to 1.25.0 (#1692) * Bump SixLabors.ImageSharp from 3.0.2 to 3.1.0 (#1693) * Bump NUnit from 4.0.0 to 4.0.1 Bumps [NUnit](https://github.com/nunit/nunit) from 4.0.0 to 4.0.1. - [Release notes](https://github.com/nunit/nunit/releases) - [Changelog](https://github.com/nunit/nunit/blob/master/CHANGES.md) - [Commits](nunit/nunit@v4.0.0...v4.0.1) --- updated-dependencies: - dependency-name: NUnit dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * Bump SixLabors.ImageSharp.Drawing from 2.0.1 to 2.1.0 Bumps [SixLabors.ImageSharp.Drawing](https://github.com/SixLabors/ImageSharp.Drawing) from 2.0.1 to 2.1.0. - [Release notes](https://github.com/SixLabors/ImageSharp.Drawing/releases) - [Commits](SixLabors/ImageSharp.Drawing@v2.0.1...v2.1.0) --- updated-dependencies: - dependency-name: SixLabors.ImageSharp.Drawing dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> * Implement first pass at platform export tool (#1672) * Implement first pass at platform export tool * Remove dead code, add progress report * Syntax fix * Note command addition in CHANGELOG * ignore certain dqe types --------- Co-authored-by: James A Sutherland <> Co-authored-by: James Friel <[email protected]> * update rdmp client xml * Bump SixLabors.ImageSharp from 3.1.0 to 3.1.1 Bumps [SixLabors.ImageSharp](https://github.com/SixLabors/ImageSharp) from 3.1.0 to 3.1.1. - [Release notes](https://github.com/SixLabors/ImageSharp/releases) - [Commits](SixLabors/ImageSharp@v3.1.0...v3.1.1) --- updated-dependencies: - dependency-name: SixLabors.ImageSharp dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> * Bump MongoDB.Driver from 2.22.0 to 2.23.0 Bumps [MongoDB.Driver](https://github.com/mongodb/mongo-csharp-driver) from 2.22.0 to 2.23.0. - [Release notes](https://github.com/mongodb/mongo-csharp-driver/releases) - [Commits](mongodb/mongo-csharp-driver@v2.22.0...v2.23.0) --- updated-dependencies: - dependency-name: MongoDB.Driver dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: jas88 <[email protected]> Co-authored-by: James A Sutherland <[email protected]> Co-authored-by: James A Sutherland <unknown> Co-authored-by: Brian <[email protected]>
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