Regenerate test bundle

HUPO-PSI · Aug 31, 2024 · d0f9467 · d0f9467
1 parent 40c6dd5
commit d0f9467
Show file tree

Hide file tree

Showing 6 changed files with 12 additions and 7 deletions.
diff --git a/examples/chinese_hamster_hcd_selected_head.mzlb.txt b/examples/chinese_hamster_hcd_selected_head.mzlb.txt
@@ -1,4 +1,4 @@
-<mzSpecLib 1.0>
+<mzSpecLib>
 MS:1003186|library format version=1.0
 MS:1003188|library name=examples/chinese_hamster_hcd_selected_head
 <AttributeSet Spectrum=all>

diff --git a/mzspeclib/backends/json.py b/mzspeclib/backends/json.py
@@ -509,8 +509,10 @@ def flush(self):
                     json.dump(spectra, self.handle)
 
     def close(self):
-        self.flush()
-        self.handle.close()
+        if not self.handle.closed:
+            self.flush()
+            self.handle.close()
+
 
 
 def format_spectrum(spectrum: Spectrum, pretty_print=True, **kwargs) -> str:

diff --git a/mzspeclib/backends/msp.py b/mzspeclib/backends/msp.py
@@ -2146,4 +2146,5 @@ def _write_peaks(self, spectrum: Spectrum):
             self.handle.write(f'{peak[0]:0.4f}\t{peak[1]:0.4f}\t"{annot}"\n')
 
     def close(self):
-        self.handle.close()
+        if not self.handle.closed:
+            self.handle.close()
diff --git a/mzspeclib/backends/text.py b/mzspeclib/backends/text.py
@@ -1020,7 +1020,8 @@ def write_cluster(self, cluster: SpectrumCluster):
         self.handle.write("\n")
 
     def close(self):
-        self.handle.close()
+        if not self.handle.closed:
+            self.handle.close()
 
 
 def format_aggregation(value: Union[numbers.Number, str]) -> str:

diff --git a/mzspeclib/backends/utils.py b/mzspeclib/backends/utils.py
@@ -368,8 +368,9 @@ def close(self):
         self.buffer.close()
         return self.stream.close()
 
+    @property
     def closed(self):
-        return self.stream.closed()
+        return self.stream.closed
 
     def seekable(self):
         return True

diff --git a/tests/test_data/chinese_hamster_hcd_selected_head.mzlb.txt b/tests/test_data/chinese_hamster_hcd_selected_head.mzlb.txt
@@ -1,4 +1,4 @@
-<mzSpecLib 1.0>
+<mzSpecLib>
 MS:1003186|library format version=1.0
 MS:1003188|library name=tests/test_data/chinese_hamster_hcd_selected_head
 <AttributeSet Spectrum=all>