Update README.md

README.md

@@ -23,18 +23,26 @@ To install _BacterialTyper_ you need to create a _conda_ environment with all de
 We recommend using _mamba_ to solve all dependencies and conflicts. To install _mamba_ simply type in the base environemt:
 
 ```
+## create environment and activate it
+conda create -y -n BacterialTyper
+conda activate BacterialTyper
+
+## install mamba
 conda install -c conda-forge mamba
 ```
+
 Then, use mamba instead of conda to install further packages.
 
 So far, you can either install BacterialTyper using:
 - a configuration file within this git repository (**BacterialTyper/devel/conda/bacterialtyper-list.txt**). See file [here](https://github.com/HCGB-IGTP/BacterialTyper/blob/master/devel/conda/bacterialtyper-list.txt)
 - or typing the following _conda_/_mamba_ command:
 
 ```
-mamba create -n BacterialTyper_mamba python
-conda activate BacterialTyper_mamba
-mamba install -c r -c bioconda -c conda-forge perl-bio-searchio-hmmer perl-bioperl trimmomatic fastqc spades snippy prokka kma agrvate staphopia-sccmec kraken2 bowtie2 ncbi-amrfinderplus bracken krakentools mlst
+mamba install -c r -c bioconda -c conda-forge \
+  perl-bio-searchio-hmmer perl-bioperl \
+  trimmomatic fastqc spades snippy prokka kma  \
+  agrvate staphopia-sccmec kraken2 bowtie2  \
+  ncbi-amrfinderplus bracken krakentools mlst
 ```
 
 Finally, you will need to install _BacterialTyper_ which is host in pypi [here](https://pypi.org/project/BacterialTyper/). Use _pip_ and type: