The model model.keras was trained on the following high-coverage 1KG samples:
- HG01053
- HG01114
- HG01881
- HG02018
- HG02924
- HG03992
- NA06991
with Manta (v1.1.0) DEL calls labelled using the following truth set:
1KGP_3202.Illumina_ensemble_callset.freeze_V1.vcf.gz
Training was performed with the following snakemake workflow: