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Merge pull request #89 from sanger-bentley-group/dev
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Hotfix: Update on storage details
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HarryHung authored Jan 19, 2024
2 parents f6ca913 + 846caeb commit 54ab60a
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Expand Up @@ -52,11 +52,11 @@ The development of this pipeline is part of the GPS Project ([Global Pneumococca
- Java 11 or later (up to 21) ([OpenJDK](https://openjdk.org/)/[Oracle Java](https://www.oracle.com/java/))
- [Docker](https://www.docker.com/) or [Singularity](https://sylabs.io/singularity/)/[Apptainer](https://apptainer.org/)
- For Linux, [Singularity](https://sylabs.io/singularity/)/[Apptainer](https://apptainer.org/) or [Docker Engine](https://docs.docker.com/engine/) is recommended over [Docker Desktop for Linux](https://docs.docker.com/desktop/). The latter is known to cause permission issues when running the pipeline on Linux.
- It is recommended to have at least 16GB of RAM and 100GB of free storage
- It is recommended to have at least 16GB of RAM and 50GB of free storage
> ℹ️ Details on storage
> - The pipeline core files use < 1GB
> - All default databases use ~30GB in total
> - All Docker images use ~12GB in total; alternatively, Singularity images use ~4GB in total
> - The pipeline core files use ~5MB
> - All default databases use ~8GB in total
> - All Docker images use ~13GB in total; alternatively, Singularity images use ~4.5GB in total
> - The pipeline generates ~1.8GB intermediate files for each sample on average<br>(These files can be removed when the pipeline run is completed, please refer to [Clean Up](#clean-up))<br>
(To further reduce storage requirement by sacrificing the ability to resume the pipeline, please refer to [Experimental](#experimental))
## Accepted Inputs
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