upgrade to jupyterlab > 4 #112
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| --- | |
| name: Integration Test | |
| on: | |
| pull_request: | |
| branches: | |
| - develop | |
| paths: | |
| - '.github/workflows/integration-test.yml' | |
| - 'docker/**' | |
| push: | |
| branches: | |
| - develop | |
| paths: | |
| - '.github/workflows/integration-test.yml' | |
| - 'docker/**' | |
| release: | |
| types: [published] | |
| permissions: | |
| id-token: write | |
| contents: read | |
| pull-requests: write # Required for Sandbox image packages comment bot | |
| jobs: | |
| integration-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: git checkout dea-sandbox | |
| uses: actions/checkout@v3 | |
| with: | |
| path: dea-sandbox | |
| - name: git checkout dea-notebooks | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: GeoscienceAustralia/dea-notebooks | |
| path: dea-notebooks | |
| ref: stable | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| role-to-assume: arn:aws:iam::538673716275:role/github-actions-role-readonly | |
| aws-region: ap-southeast-2 | |
| - name: Copy tide modelling files with the AWS CLI | |
| run: | | |
| aws s3 sync s3://dea-non-public-data/tide_models/tide_models/fes2014 tide_models/fes2014 | |
| aws s3 sync s3://dea-non-public-data/tide_models/tide_models/hamtide tide_models/hamtide | |
| - name: Start docker compose | |
| run: | | |
| sudo chown -R 1000:100 ./dea-notebooks | |
| cd ./dea-sandbox/integration-testing | |
| CURRENT_UID=1000:100 docker compose up -d | |
| - name: Extract package versions | |
| run: | | |
| cd ./dea-sandbox/integration-testing | |
| docker compose exec -T sandbox cat /tmp/requirements.txt > requirements.txt | |
| - name: Read package versions | |
| id: versions | |
| run: | | |
| { | |
| echo 'content<<EOF' | |
| cat ./dea-sandbox/integration-testing/requirements.txt | |
| echo EOF | |
| } >> "$GITHUB_OUTPUT" | |
| # Post package versions as a comment on the PR | |
| - name: Post package versions as a comment | |
| uses: mshick/add-pr-comment@v2 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| message: | | |
| ### Installed packages: | |
| ``` | |
| ${{ steps.versions.outputs.content }} | |
| ``` | |
| - name: Set up Datacube and Test | |
| run: | | |
| cd ./dea-sandbox/integration-testing | |
| docker compose exec -T sandbox ./dea-notebooks/Tests/setup_test_datacube.sh | |
| docker compose exec -T sandbox ./dea-notebooks/Tests/test_notebooks.sh |