adding Seqkit

GenomicsAotearoa · Sep 5, 2023 · 8f54028 · 8f54028
1 parent 03b89a4
commit 8f54028
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/docs/level1/32_nanopore_filtering.md b/docs/level1/32_nanopore_filtering.md
@@ -132,10 +132,10 @@ A different more informative way of looking at our data before and after filteri
     ??? success "Output"
 
         ```bash
-        file|format|type|num_seqs|sum_len|min_len|avg_len|max_len|Q1|Q2|Q3|sum_gap|N50|Q20(%)|Q30(%)|GC(%)
+        |file|format|type|num_seqs|sum_len|min_len|avg_len|max_len|Q1|Q2|Q3|sum_gap|N50|Q20(%)|Q30(%)|GC(%)|
         |---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
-        results/nanopore.porechop.fq|FASTQ|DNA|3,735|45,214,457|6|12,105.6|82,753|2,723.5|8,489|17,927|0|21,118|69.79|50.97|30.83
-        results/nanopore.qc.fq|FASTQ|DNA|1,313|16,675,742|500|12,700.5|77,866|3,658|9,245|18,869|0|21,365|78.07|58.66|31.03
+        |results/nanopore.porechop.fq|FASTQ|DNA|3,735|45,214,457|6|12,105.6|82,753|2,723.5|8,489|17,927|0|21,118|69.79|50.97|30.83|
+        |results/nanopore.qc.fq|FASTQ|DNA|1,313|16,675,742|500|12,700.5|77,866|3,658|9,245|18,869|0|21,365|78.07|58.66|31.03|
         ```
 
 How many sequences did we lose in the process?