Decrease k-mer length as NS is very small

GenSpectrum · Oct 14, 2024 · 0cd4f48 · 0cd4f48
1 parent e8cb8cc
commit 0cd4f48
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/data/flu/h5n1/seg8/unreleased/pathogen.json b/data/flu/h5n1/seg8/unreleased/pathogen.json
@@ -1,9 +1,8 @@
 {
   "alignmentParams": {
     "minSeedCover": 0.005,
-    "excessBandwidth": 9,
-    "terminalBandwidth": 100,
-    "allowedMismatches": 8
+    "kmerLength":7,
+    "allowedMismatches": 12
   },
   "schemaVersion": "3.0.0",
   "attributes": {