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update update database
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@MarvinDo
MarvinDo committed Feb 21, 2024
1 parent fddbbc1 commit 977ff36
Showing 1 changed file with 133 additions and 134 deletions.
267 changes: 133 additions & 134 deletions resources/backups/database_dumper/update_database_5.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -145,139 +145,139 @@
-- CHANGE COLUMN `paper` `link` TEXT NULL DEFAULT NULL ;


ALTER TABLE `HerediVar`.`assay_metadata`
CHANGE COLUMN `metadata_type_id` `assay_metadata_type_id` INT(11) NOT NULL ;


GRANT SELECT ON HerediVar.assay_type TO 'HerediVar_annotation';
GRANT SELECT ON HerediVar.assay_type TO 'HerediVar_user';
GRANT SELECT ON HerediVar.assay_type TO 'HerediVar_superuser';
GRANT SELECT ON HerediVar.assay_type TO 'HerediVar_read_only';


GRANT SELECT ON HerediVar.assay_metadata_type TO 'HerediVar_annotation';
GRANT SELECT ON HerediVar.assay_metadata_type TO 'HerediVar_user';
GRANT SELECT ON HerediVar.assay_metadata_type TO 'HerediVar_superuser';
GRANT SELECT ON HerediVar.assay_metadata_type TO 'HerediVar_read_only';


GRANT SELECT, INSERT ON HerediVar.assay_metadata TO 'HerediVar_annotation';
GRANT SELECT, INSERT ON HerediVar.assay_metadata TO 'HerediVar_user';
GRANT SELECT, INSERT ON HerediVar.assay_metadata TO 'HerediVar_superuser';
GRANT SELECT ON HerediVar.assay_metadata TO 'HerediVar_read_only';

GRANT INSERT ON HerediVar.assay TO 'HerediVar_annotation';
GRANT DELETE ON HerediVar.assay TO 'HerediVar_annotation';


ALTER TABLE `HerediVar`.`assay`
ADD COLUMN `user_id` INT UNSIGNED NULL AFTER `date`;


ALTER TABLE `HerediVar`.`assay`
ADD INDEX `FK_assay_assay_type_idx` (`assay_type_id` ASC);
;
ALTER TABLE `HerediVar`.`assay`
ADD CONSTRAINT `FK_assay_assay_type`
FOREIGN KEY (`assay_type_id`)
REFERENCES `HerediVar`.`assay_type` (`id`)
ON DELETE NO ACTION
ON UPDATE NO ACTION;


ALTER TABLE `HerediVar`.`assay`
ADD INDEX `FK_assay_user_idx` (`user_id` ASC);
;
ALTER TABLE `HerediVar`.`assay`
ADD CONSTRAINT `FK_assay_user`
FOREIGN KEY (`user_id`)
REFERENCES `HerediVar`.`user` (`id`)
ON DELETE NO ACTION
ON UPDATE NO ACTION;

ALTER TABLE `HerediVar`.`assay`
DROP FOREIGN KEY `FK_assay_variant`;
ALTER TABLE `HerediVar`.`assay`
ADD CONSTRAINT `FK_assay_variant`
FOREIGN KEY (`variant_id`)
REFERENCES `HerediVar`.`variant` (`id`)
ON DELETE NO ACTION
ON UPDATE NO ACTION;


ALTER TABLE `HerediVar`.`assay_metadata`
CHANGE COLUMN `assay_metadata_type_id` `assay_metadata_type_id` INT(11) UNSIGNED NOT NULL ,
ADD INDEX `FK_assay_metadata_assay_idx` (`assay_id` ASC),
ADD INDEX `FK_assay_metadata_assay_metadata_type_idx` (`assay_metadata_type_id` ASC);
;
ALTER TABLE `HerediVar`.`assay_metadata`
ADD CONSTRAINT `FK_assay_metadata_assay`
FOREIGN KEY (`assay_id`)
REFERENCES `HerediVar`.`assay` (`id`)
ON DELETE CASCADE
ON UPDATE NO ACTION,
ADD CONSTRAINT `FK_assay_metadata_assay_metadata_type`
FOREIGN KEY (`assay_metadata_type_id`)
REFERENCES `HerediVar`.`assay_metadata_type` (`id`)
ON DELETE NO ACTION
ON UPDATE NO ACTION;


ALTER TABLE `HerediVar`.`assay_metadata`
DROP FOREIGN KEY `FK_assay_metadata_assay_metadata_type`;
ALTER TABLE `HerediVar`.`assay_metadata`
ADD CONSTRAINT `FK_assay_metadata_assay_metadata_type`
FOREIGN KEY (`assay_metadata_type_id`)
REFERENCES `HerediVar`.`assay_metadata_type` (`id`)
ON DELETE CASCADE
ON UPDATE NO ACTION;




CREATE TABLE `HerediVar`.`heredicare_ZID` (
`id` INT UNSIGNED NOT NULL AUTO_INCREMENT,
`ZID` INT NOT NULL,
`name` VARCHAR(45) NOT NULL,
PRIMARY KEY (`id`))
ENGINE = InnoDB
DEFAULT CHARACTER SET = utf8;

ALTER TABLE `HerediVar`.`heredicare_ZID`
DROP COLUMN `id`,
CHANGE COLUMN `ZID` `ZID` INT(11) UNSIGNED NOT NULL ,
DROP PRIMARY KEY,
ADD PRIMARY KEY (`ZID`);
;

INSERT INTO `HerediVar`.`heredicare_ZID` (ZID, name) VALUES
(1, "Berlin"),
(2, "Leipzig"),
(3, "Dresden"),
(4, "München-LMU"),
(5, "Würzburg"),
(6, "Ulm"),
(7, "Heidelberg"),
(8, "Frankfurt"),
(9, "Köln"),
(10, "Düsseldorf"),
(11, "Münster"),
(12, "Kiel"),
(13, "Wiesbaden"),
(14, "München-TU"),
(15, "Hannover"),
(16, "Regensburg"),
(17, "Tübingen"),
(18, "Göttingen"),
(19, "Hamburg"),
(20, "Greifswald"),
(21, "Freiburg"),
(22, "Erlangen"),
(23, "Halle"),
(24, "Mainz"),
(25, "Lübeck");


-- ALTER TABLE `HerediVar`.`assay_metadata`
-- CHANGE COLUMN `metadata_type_id` `assay_metadata_type_id` INT(11) NOT NULL ;
--
--
-- GRANT SELECT ON HerediVar.assay_type TO 'HerediVar_annotation';
-- GRANT SELECT ON HerediVar.assay_type TO 'HerediVar_user';
-- GRANT SELECT ON HerediVar.assay_type TO 'HerediVar_superuser';
-- GRANT SELECT ON HerediVar.assay_type TO 'HerediVar_read_only';
--
--
-- GRANT SELECT ON HerediVar.assay_metadata_type TO 'HerediVar_annotation';
-- GRANT SELECT ON HerediVar.assay_metadata_type TO 'HerediVar_user';
-- GRANT SELECT ON HerediVar.assay_metadata_type TO 'HerediVar_superuser';
-- GRANT SELECT ON HerediVar.assay_metadata_type TO 'HerediVar_read_only';
--
--
-- GRANT SELECT, INSERT ON HerediVar.assay_metadata TO 'HerediVar_annotation';
-- GRANT SELECT, INSERT ON HerediVar.assay_metadata TO 'HerediVar_user';
-- GRANT SELECT, INSERT ON HerediVar.assay_metadata TO 'HerediVar_superuser';
-- GRANT SELECT ON HerediVar.assay_metadata TO 'HerediVar_read_only';
--
-- GRANT INSERT ON HerediVar.assay TO 'HerediVar_annotation';
-- GRANT DELETE ON HerediVar.assay TO 'HerediVar_annotation';
--
--
-- ALTER TABLE `HerediVar`.`assay`
-- ADD COLUMN `user_id` INT UNSIGNED NULL AFTER `date`;
--
--
-- ALTER TABLE `HerediVar`.`assay`
-- ADD INDEX `FK_assay_assay_type_idx` (`assay_type_id` ASC);
-- ;
-- ALTER TABLE `HerediVar`.`assay`
-- ADD CONSTRAINT `FK_assay_assay_type`
-- FOREIGN KEY (`assay_type_id`)
-- REFERENCES `HerediVar`.`assay_type` (`id`)
-- ON DELETE NO ACTION
-- ON UPDATE NO ACTION;
--
--
-- ALTER TABLE `HerediVar`.`assay`
-- ADD INDEX `FK_assay_user_idx` (`user_id` ASC);
-- ;
-- ALTER TABLE `HerediVar`.`assay`
-- ADD CONSTRAINT `FK_assay_user`
-- FOREIGN KEY (`user_id`)
-- REFERENCES `HerediVar`.`user` (`id`)
-- ON DELETE NO ACTION
-- ON UPDATE NO ACTION;
--
-- ALTER TABLE `HerediVar`.`assay`
-- DROP FOREIGN KEY `FK_assay_variant`;
-- ALTER TABLE `HerediVar`.`assay`
-- ADD CONSTRAINT `FK_assay_variant`
-- FOREIGN KEY (`variant_id`)
-- REFERENCES `HerediVar`.`variant` (`id`)
-- ON DELETE NO ACTION
-- ON UPDATE NO ACTION;
--
--
-- ALTER TABLE `HerediVar`.`assay_metadata`
-- CHANGE COLUMN `assay_metadata_type_id` `assay_metadata_type_id` INT(11) UNSIGNED NOT NULL ,
-- ADD INDEX `FK_assay_metadata_assay_idx` (`assay_id` ASC),
-- ADD INDEX `FK_assay_metadata_assay_metadata_type_idx` (`assay_metadata_type_id` ASC);
-- ;
-- ALTER TABLE `HerediVar`.`assay_metadata`
-- ADD CONSTRAINT `FK_assay_metadata_assay`
-- FOREIGN KEY (`assay_id`)
-- REFERENCES `HerediVar`.`assay` (`id`)
-- ON DELETE CASCADE
-- ON UPDATE NO ACTION,
-- ADD CONSTRAINT `FK_assay_metadata_assay_metadata_type`
-- FOREIGN KEY (`assay_metadata_type_id`)
-- REFERENCES `HerediVar`.`assay_metadata_type` (`id`)
-- ON DELETE NO ACTION
-- ON UPDATE NO ACTION;
--
--
-- ALTER TABLE `HerediVar`.`assay_metadata`
-- DROP FOREIGN KEY `FK_assay_metadata_assay_metadata_type`;
-- ALTER TABLE `HerediVar`.`assay_metadata`
-- ADD CONSTRAINT `FK_assay_metadata_assay_metadata_type`
-- FOREIGN KEY (`assay_metadata_type_id`)
-- REFERENCES `HerediVar`.`assay_metadata_type` (`id`)
-- ON DELETE CASCADE
-- ON UPDATE NO ACTION;
--
--
--
--
-- CREATE TABLE `HerediVar`.`heredicare_ZID` (
-- `id` INT UNSIGNED NOT NULL AUTO_INCREMENT,
-- `ZID` INT NOT NULL,
-- `name` VARCHAR(45) NOT NULL,
-- PRIMARY KEY (`id`))
-- ENGINE = InnoDB
-- DEFAULT CHARACTER SET = utf8;
--
-- ALTER TABLE `HerediVar`.`heredicare_ZID`
-- DROP COLUMN `id`,
-- CHANGE COLUMN `ZID` `ZID` INT(11) UNSIGNED NOT NULL ,
-- DROP PRIMARY KEY,
-- ADD PRIMARY KEY (`ZID`);
-- ;
--
-- INSERT INTO `HerediVar`.`heredicare_ZID` (ZID, name) VALUES
-- (1, "Berlin"),
-- (2, "Leipzig"),
-- (3, "Dresden"),
-- (4, "München-LMU"),
-- (5, "Würzburg"),
-- (6, "Ulm"),
-- (7, "Heidelberg"),
-- (8, "Frankfurt"),
-- (9, "Köln"),
-- (10, "Düsseldorf"),
-- (11, "Münster"),
-- (12, "Kiel"),
-- (13, "Wiesbaden"),
-- (14, "München-TU"),
-- (15, "Hannover"),
-- (16, "Regensburg"),
-- (17, "Tübingen"),
-- (18, "Göttingen"),
-- (19, "Hamburg"),
-- (20, "Greifswald"),
-- (21, "Freiburg"),
-- (22, "Erlangen"),
-- (23, "Halle"),
-- (24, "Mainz"),
-- (25, "Lübeck");
--
--
-- ALTER TABLE `HerediVar`.`heredicare_center_classification`
-- DROP FOREIGN KEY `FK_heredicare_center_classification_variant`;
-- ALTER TABLE `HerediVar`.`heredicare_center_classification`
Expand Down Expand Up @@ -334,7 +334,6 @@ INSERT INTO `HerediVar`.`heredicare_ZID` (ZID, name) VALUES
-- ON UPDATE NO ACTION;
--

DROP TABLE IF EXISTS `HerediVar`.`heredicare_center_classification`
CREATE TABLE `HerediVar`.`heredicare_center_classification` (
`id` int(10) unsigned NOT NULL AUTO_INCREMENT,
`variant_heredicare_annotation_id` int(10) unsigned NOT NULL,
Expand Down

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