fix update database

GC-HBOC · Feb 21, 2024 · 49ba77d · 49ba77d
1 parent 7d94df8
commit 49ba77d
Showing 1 changed file with 11 additions and 11 deletions.
diff --git a/resources/backups/database_dumper/update_database_5.sql b/resources/backups/database_dumper/update_database_5.sql
@@ -54,7 +54,7 @@ ALTER TABLE `HerediVar`.`variant_heredicare_annotation`
 CHANGE COLUMN `lr_family` `lr_family` FLOAT NULL DEFAULT NULL ;
 
 
-UPDATE `HerediVar`.`annotation_type` SET is_deleted=1 WHERE title="arup_classification"
+UPDATE `HerediVar`.`annotation_type` SET is_deleted=1 WHERE title="arup_classification";
 
 
 
@@ -108,15 +108,15 @@ ALTER TABLE `HerediVar`.`assay_metadata_type`
 CHANGE COLUMN `value_type` `value_type` TEXT NOT NULL ;
 
 
-INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('patient_rna', 'Patient RNA', (SELECT id FROM assay_type WHERE title='splicing'), 'bool')
-INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('minigene', 'Minigene', (SELECT id FROM assay_type WHERE title='splicing'), 'bool')
-INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('allele_specific', 'Allele-Specific', (SELECT id FROM assay_type WHERE title='splicing'), 'ENUM:True,False,Construct')
-INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('comment', 'Comment', (SELECT id FROM assay_type WHERE title='splicing'), 'text')
-INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('score', 'Score', (SELECT id FROM assay_type WHERE title='splicing'), 'float')
-INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('minimal_percentage', 'Percent aberrant transcript', (SELECT id FROM assay_type WHERE title='splicing'), 'float')
+INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('patient_rna', 'Patient RNA', (SELECT id FROM assay_type WHERE title='splicing'), 'bool');
+INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('minigene', 'Minigene', (SELECT id FROM assay_type WHERE title='splicing'), 'bool');
+INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('allele_specific', 'Allele-Specific', (SELECT id FROM assay_type WHERE title='splicing'), 'ENUM:True,False,Construct');
+INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('comment', 'Comment', (SELECT id FROM assay_type WHERE title='splicing'), 'text');
+INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('score', 'Score', (SELECT id FROM assay_type WHERE title='splicing'), 'float');
+INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('minimal_percentage', 'Percent aberrant transcript', (SELECT id FROM assay_type WHERE title='splicing'), 'float');
 
-INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('functional_category', 'Functional category', (SELECT id FROM assay_type WHERE title='functional'), 'ENUM:Pathogenic,Benign,Ambigous')
-INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('score', 'Score', (SELECT id FROM assay_type WHERE title='functional'), 'float')
+INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('functional_category', 'Functional category', (SELECT id FROM assay_type WHERE title='functional'), 'ENUM:Pathogenic,Benign,Ambigous');
+INSERT INTO `HerediVar`.`assay_metadata_type` (title, display_title, assay_type_id, value_type) VALUES ('score', 'Score', (SELECT id FROM assay_type WHERE title='functional'), 'float');
 
 
 UPDATE `HerediVar`.`assay_metadata_type` SET `is_required` = '0' WHERE (`title` = 'comment');
@@ -127,8 +127,8 @@ UPDATE `HerediVar`.`assay_metadata_type` SET `is_required` = '0' WHERE (`title`
 ALTER TABLE `HerediVar`.`assay` 
 ADD COLUMN `assay_type_id` INT UNSIGNED NOT NULL AFTER `assay_type`;
 
-UPDATE assay SET assay_type_id = (SELECT id FROM assay_type WHERE title = 'functional') WHERE assay_type = 'functional'
-UPDATE assay SET assay_type_id = (SELECT id FROM assay_type WHERE title = 'splicing') WHERE assay_type = 'splicing'
+UPDATE assay SET assay_type_id = (SELECT id FROM assay_type WHERE title = 'functional') WHERE assay_type = 'functional';
+UPDATE assay SET assay_type_id = (SELECT id FROM assay_type WHERE title = 'splicing') WHERE assay_type = 'splicing';
 
 ALTER TABLE `HerediVar`.`assay` 
 DROP COLUMN `assay_type`;