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GATB Core API and documentation
Patrick Durand edited this page May 19, 2017
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GATB-Core comes with a full documentation targetting the c++ classes and methods contained in the library.
- Bank snippets: reading and writing Fasta/FastQ files, plain text or compressed
- Kmer snippets: handling k-mer models
- De Bruijn graph snippets: handling De Bruijn graphs
- Iterators snippets: playing with sequences, kmers, etc.
- Multithreading snippets: making high-performance code
- Storage snippets: storing your data easily using HDF5 format
- Tools snippets: making full-featured softwares including command-line options
To use these code snippets on your computer, you'll have to install and compile GATB-Core. So, we also provide an online GATB-Core Tutorial relying on some of the above code-snippets that does not require you install the library on your system.