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rchikhi committed Nov 21, 2023
1 parent 3bd86d6 commit b1a2764
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ void link_tigs(string unitigs_filename, int kmerSize, int nb_threads, uint64_t &
bcalm_logging = verbose;
BankFasta* out = new BankFasta(unitigs_filename+".linked");
if (kmerSize < 4) { std::cout << "error, link_unitigs doesn't support k<5, sorry. Contact a developer if you really need k<4 support (alternatively: construct that tiny dBG using Python :)" << std::endl; exit(1); }
logging("Finding links between unitigs");
logging("Finding links between tigs");

for (int pass = 0; pass < nb_passes; pass++)
link_unitigs_pass<span>(unitigs_filename, verbose, pass, kmerSize, edge_km_representation, renumber_unitigs );
Expand All @@ -68,7 +68,7 @@ void link_tigs(string unitigs_filename, int kmerSize, int nb_threads, uint64_t &
system::impl::System::file().remove (unitigs_filename);
system::impl::System::file().rename (unitigs_filename+".linked", unitigs_filename);

logging("Done finding links between unitigs");
logging("Done finding links between tigs");
}


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