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some more doc
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rchikhi committed Apr 22, 2016
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Expand Up @@ -105,6 +105,15 @@ Just compile from the source, to support k-mer lengths up to, say, 160, type thi
rm -Rf CMake* && cmake -Dk4=160 .. && make


## Disk space and speed

As a general rule of thumb, run DSK in a folder with plenty of free space, i.e. several times the size of the input dataset.
You can also specify the ```-out-tmp``` parameter to a location with free space.
In the output during execution, the number of passes should be low (below 10).
Else this generally means that more disk space would make the execution much faster.
DSK auto-detects the free disk space and uses a fraction of it. You can specify ```-max-disk``` parameter to fine-tune this.


## Homepage, contact

https://gatb.inria.fr/software/dsk/
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