print commands being run to make sure inputs are being used in womtoo…

…l runs
FredHutch · Jan 3, 2025 · 73cb3de · 73cb3de
1 parent 36b704f
commit 73cb3de
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Showing 2 changed files with 8 additions and 2 deletions.
diff --git a/.github/workflows/womtools-validate.yml b/.github/workflows/womtools-validate.yml
@@ -52,4 +52,4 @@ jobs:
       - name: Validate WDL Scripts
         env:
           WOMTOOL_PATH: womtool-86.jar
-        run: uv run pytest tests/validate/test-validate.py --wdl-path=${{ matrix.wdl }} --verbose
+        run: uv run pytest tests/validate/test-validate.py --wdl-path=${{ matrix.wdl }} --verbose -s
diff --git a/tests/validate/utils.py b/tests/validate/utils.py
@@ -19,10 +19,16 @@ def has_inputs(self, wdl_path):
     def validate(self, wdl_path):
         try:
             self.has_inputs(wdl_path)
-            self.womtool(
+            self.womtool = self.womtool.bake(
                 "validate",
                 f"{wdl_path}/{wdl_path}.wdl",
             )
+            print(self.womtool)
+            self.womtool()
+            # self.womtool(
+            #     "validate",
+            #     f"{wdl_path}/{wdl_path}.wdl",
+            # )
         except sh.ErrorReturnCode as e:
             print(f"Command {e.full_cmd} exited with {e.exit_code}")
             return False