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A pure python library to create, modify and read CombineArchives

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pyCombineArchive

A pure python library to create, modify and read COMBINE Archives

Project Status

Currently the development of this project is stalled, due to me not working in this field anymore. This library was initially developed to implement support for COMBINE Archives in JWS Online. For this purpose it is feature complete, implementing basic create, read, update operations for both files within a COMBINE Archive and their respective meta data encoded in the OMEX format.

If you wish to continue development and maintainance, please contact me. You may also want to take a look into the mailing list discussion, for alternatives to this library.

Running Tests

runs all unit tests and generates a code coverage report. Please note, that the unit tests of this library are using test CombineArchives from the SEMS CombineArchive library for Java

coverage run --source=. -m unittest discover -s tests/ -p "test_*.py"
coverage report

License

This library is licensed under the BSD-3-Clause

Copyright (c) 2016, Martin Peters
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
  list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice,
  this list of conditions and the following disclaimer in the documentation
  and/or other materials provided with the distribution.

* Neither the name of [project] nor the names of its
  contributors may be used to endorse or promote products derived from
  this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

This library also includes a modified version of the Python zipfile module and corresponding unittests, which was released under the PSF LICENSE AGREEMENT. This modul is shipped as custom_zip.py and test_zipfile.py as well as custom_support.py

1. This LICENSE AGREEMENT is between the Python Software Foundation ("PSF"), and
   the Individual or Organization ("Licensee") accessing and otherwise using Python
   2.7.11 software in source or binary form and its associated documentation.

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